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Report for CCDS39202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39202.1 Public Mus musculus 5 Ccdc18 23 108 98 CCDS HistoryNCBI Gene:73254Re-query CCDS DB by CCDS ID:39202.1Re-query CCDS DB by GeneID:73254See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047677.8 ENSMUSP00000036507.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047677.8Link to Ensembl Protein Viewer:ENSMUSP00000036507.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047677Re-query CCDS DB by Protein ID:ENSMUSP00000036507
Original member Current member NCBI NM_028481.1 NP_082757.1 Accepted alive Link to Nucleotide Sequence:NM_028481.1Link to Protein Sequence:NP_082757.1Re-query CCDS DB by Nucleotide ID:NM_028481Re-query CCDS DB by Protein ID:NP_082757Link to BLAST:NP_082757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082757.1 1455 Q640L5-1 1455 100% 0 0

Chromosomal Locations for CCDS 39202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108135425 108135564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108135973 108136144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108138914 108139072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108140859 108140965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108148911 108149039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108155759 108155855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108158525 108158646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108161467 108161758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108163648 108163772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108168009 108168163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108171613 108171833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108173751 108173861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108174866 108174997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108180398 108180532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108180814 108180891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108188932 108189048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108191883 108192050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108193701 108193843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108195996 108196159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108197757 108197970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108201325 108201424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108202065 108202181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108206595 108206738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108212094 108212297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108215987 108216124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108220698 108220898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108228580 108229047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108232734 108232748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4368 nt):
ATGGAATTTATCTCATCAGACTACTGTACTAAAGACAACGACAATGAGGAGGAAAGTTTGCTTGCAAACG
TTGCTTCATTAAGACATGAACTCAAAATAACAGAATGGAGTTTGCACAATTTAGGGGAAGAGTTATCCAG
TGTTAGTCCAAGTGAAAATTCTGAGTATGTCTGCAGTCCTTCAAGATCTGAAAGGCTTATTTTGGAAGAA
CTCACCCAACCTAGCCACCTGGGACGTTTGATTTACCCACCTTATAAGAAAGTTTGTAAAACATCTGATA
GTACTGATTATCAAAAGAAATCAAGAGATCAGGTGTCTTTTTCATCTGTTTCTATGGATCAAGAGGTTAA
AAACCTTCGAGAGAAACTTCATAAACTTAGGCAACAGAATGCTTGTTTGGTCACACAGAATCATTCTTTA
ATGACTAAAATAGAATCTGTCCACTTTGAATTGACACAATCAAAAGCAAAAATTGCTATGCTTGAGTCTG
CACAAGAGCAGGCAGCCAACATTCCAATCTTAGAAGAACAGATTATAAATTTGGAAGCAGAAGTTTCAGC
TCAAGATAAAGTTTTGAGAGAAGCAGAAGATAAATTAGAGCAGAGTCAGAAAATGGTGATTGAAAAGGAG
CACAGTTTACAAGAGGCCAAAGAAGAGTGTATAAAATTGAAGGTGGACTTACTTGAACAGAGTAAACAAG
GAAAAAGAGCTGAGCGACAAAGGAATGAAGCCCTCTATAATGCAGAAGAGCTGAGTAAGGCCTTCCAGCT
GTACAAAGAAAAAGTGGCTGAAAAACTGGAAAAGGTTCAAGATGAAGAAGAAATATTAGAGAGAAATCTT
AGTAACTGTGAAAAGGAAAATAAAAGGCTTCAAGAAAAGTGTAATCTGTATAAAAGTGAACTTGAAATTT
TGAAAGAGAAATTCAGGGAGTTAAAAGAAGAACATTACAGTGGAAAAGAAAAATTAATGATTATGGCAAT
GAAAAACTCAGAAGTCATGTCACAGTTAACGGAATCTAGACAATGTATTCTGAAGCTAGAGAGGGAGTTA
GAGGACAAAGATGAAATAGTACGAGAAAAGTTTTCCTTATTAAATGAAAATCGAGAATTGAAGGTTCGTG
TTGCAACACAGAATGAACGACTAGAGTTGTGTCAGCAGGACATTGATAATTCAAGGGTGGAACTGAAGAG
TTTAGAAAAACTGATAACCCAGATACCATTAAAAAGAGAAATAGTTGGCTTTAGGTCATCTCTTTGTAAG
CACCAGAGGAGTAGTGTTTCTGACAAGGAGGACAAATGCATTGGCTGCTGTGAGGCAAATAAACTCATGA
TTTCTGAATTGAGGATTAAGCTTGCAATAAGAGAGGCTGAAATTCAAAAGCTTCATGCAAATCTGACTGT
GAACCAGCTCTCTCAAAATGTTGCTAATGATAGTCAAGAATGTGGTAAAGTAAACACGTTAGAAACAGAA
CCGGTAAAATTAGGAGGTAGTCAAGTCGAAAGTATAAAGGATGGAGATCAGCAGACTGTGAACAAGCAGT
ATGAAAGAGAGAAGCAGCGACTTGCTACCGGGATAGAAGAACTGCGTGCTAAGCTGACACAGATAGAAGC
TGAGAACTCTGACTTGAAGGTTAACATGGCACACAGAACTAGTCAGTTTCAGCTAATTCAAGAGGAACTA
CTAGAGAAAGCTTCAAATGCTAGCAAACTAGAAAATGAAATGACAAAGAAGTGTTCTCAACTTTTAATTC
TAGAGAAACAGCTAGAAGAAAAAATTATTGCATATTCTTCTATTGCTGCAAAAAATGCAGAACTTGAACA
AGAACTTATGGAGAAAAATGAAAAAATAAGAAGCCTAGAATCAAATATCAACACAGAACATGAGAAAATT
TGTTTTGCTTTTGAAAAAGCAAAGAAAATTCATCTTGAACAGCATAAGGAAATGGAAAAACAGATTGAGC
AACTCGAAACTCAACTGGAGAAAAGAGACCAACAGTTTAAAGAACAAGAAAAGACTATGTCCATTTTGCA
GCAAGATATACTGTGTAAACAGCATCACCTTGAATCACTAGATAGACTCTTGACAGAAAGTAAAGTGGAA
ATGGAAAAAGAAAATATGAAGAAAGATGAAGCTTTAAAAGCATTGCAGATTCATGTATCTGAAGAAACAA
TCAAGGTCAGACAACTGGATTCAGCGTTAGAAATCTGTAAGGAAGAGCTTGCTTTGCATTTGAATCAATT
GGAAAGAAATAAGGAAAAATTTGAAAGACAGCTGAAGAAGAAATCTGAAGAGGTATATTGTTTGCAGAAA
GAGCTAAAGATAAAGACTCATAATCTTGAAGAGACGAGTGAACAAAATGCCATCCTACAGCACACTCTTC
AGCAGCAGCAGCAGATGTTACAGCAAGAGACCATGAGAAATGGAGAGCTAGAAGATACTCAGAGTAAACT
TGAAAAACAGGTATCAAAGCAAGAACAAGAGCTTCAGAAACAAAGGGAAAGTTCAACAGAAAAGTTGAGA
AAAATGGAAGAGAAATATGAAACAGCCATACGTGAAGTGGATTTGAAAAGGCAAAAAATTATCGAGCTAA
CTGGTACTGCCAGGCAAGCCAAACTTGAGATGGATCAGTACAAAGAGGAGCTGTCTAAAATGGAAAAAGA
AATAATTCATTTGAAGCGAGATGGGGAAAATAAATCCATGCAGCTTTCTCAGTTAGATATGGTTTTAGAT
CAAACAAAAACAGAACTAGAAAAGACAACAAATTCAGTGAAGGAGTTAGAAAGGTTACAACACCACACAG
AAACTGAATTAACAGAAACCATGCAGAAACGGGAAGCTCTCGAAAACGAACTACAGAATGCTCATGGAGA
ATTGAAAAGTACCTTAAGACAACTACAGGAATTGAGAGATGTATTACAAAAGGCTCAGTTATCATTAGAG
GAAAAATACACTACAATAAAGGATCTCACTGCTGAACTGAGAGAATGTAAGATGGAGATTGAAGACAAAA
AACAAGAACTTATTGAAATGGATCAGGCGCTTAAGGAGAGAAATTGGGAGCTAAAGCAAAGAGCAGCTCA
GGTTACACATTTGGATATGACTATTCGTGAACACAGAGGAGAAATGGAGCAAAAAATAATCAAATTGGAG
GGTACCCTGGAAAAATCAGAATTAGAACTTAAAGAATGCAACAAACAGGTAGAAAGCTTAAATGAAAAGT
TGCAAAATGCCAAAGAACAGCTTCGAGAAAAGGAGTTTATAATGCTCCAAAATGAACAGGAGATATCACA
ACTGAAAAAGGAAATCGAAAGAACACAGCAAAGGATGAAAGAAATGGAAAGTGTTATAAAAGAACAGGAA
GACTACATTGCTACCCAGTACAAGGAGGTCATTGATTTGGGGCAAGAATTGAGGCTAACCCAGGAGCAAA
TGCAGAACACTCATTCAGAACTGGTGGAGGCTCGTCGCCAAGAAGTCCAAGCACAGAGGGAAATAGAAAG
GCTTGCTGGTGAACTGGAGGATATAAAACAACTCTCTAAAGAGAAGGAAGCTCATGGAAATCGTTTGGCT
GAAGAACTGGGGGCTTCTCAAGTACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATAAAGAAAT
TATCCTCAGAAGTAGACTCTCTGAAAGAAGCTTATCAGATAGAGATGATTTCACATCAAGAGAACCATGC
AAAGTGGAAGCTTTCTGCTGAATCTCAGAAGACGTCTGTTCAACAACTGAATGAACAACTAGAGAAAGCG
AAACAAGAATTGGAAGAAGCTCAGGATACTGTGAGCAATTTGCATCAACAAGTTCAAGACAGGAATGAAG
TCATTGAAGCTGCAAATGAAGCATTACTTATTAAAGAATCAGAATTAACCAGATTGCAAGCCAAAATTTC
TGGACATGAAAAGACAGAAGACACCAAGTATCTACCAGCTCCGTTTACAACTCTAACAGAAATTATACCT
GATAGTCAACATCCAAATTTTGCCAAACATTCTCAGATATCACTTTTCAAATGCAGAAAACTACGTCGGT
CTATTAGTGCCAGTGACCTGAGTTTCAAAAGTCATGGTAATGACGATCTCTCTGAAGAATTGCTACAGGA
CTTAAAAAAAATGCAATTTGAGCAGACTTCAGCGATAGAAAGTGGTCATAAAGACCTACCTTTAACCCAT
TCAGAGTCATTTAAACCTCTCCCGTATAACCTAGAAGATGATAGTTCTGAAAGTAATGACTTCAGTACTC
TTAGTGGAATGCTGAGATACATAAACAAAGAAGTGAGACTGCTGAAAAAATCTTCTCTGCAAACAGCTAC
TGGTTTAAGTCAGGGAGGAAAATTGTAA

Translation (1455 aa):
MEFISSDYCTKDNDNEEESLLANVASLRHELKITEWSLHNLGEELSSVSPSENSEYVCSPSRSERLILEE
LTQPSHLGRLIYPPYKKVCKTSDSTDYQKKSRDQVSFSSVSMDQEVKNLREKLHKLRQQNACLVTQNHSL
MTKIESVHFELTQSKAKIAMLESAQEQAANIPILEEQIINLEAEVSAQDKVLREAEDKLEQSQKMVIEKE
HSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQLYKEKVAEKLEKVQDEEEILERNL
SNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLEREL
EDKDEIVREKFSLLNENRELKVRVATQNERLELCQQDIDNSRVELKSLEKLITQIPLKREIVGFRSSLCK
HQRSSVSDKEDKCIGCCEANKLMISELRIKLAIREAEIQKLHANLTVNQLSQNVANDSQECGKVNTLETE
PVKLGGSQVESIKDGDQQTVNKQYEREKQRLATGIEELRAKLTQIEAENSDLKVNMAHRTSQFQLIQEEL
LEKASNASKLENEMTKKCSQLLILEKQLEEKIIAYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKI
CFAFEKAKKIHLEQHKEMEKQIEQLETQLEKRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVE
MEKENMKKDEALKALQIHVSEETIKVRQLDSALEICKEELALHLNQLERNKEKFERQLKKKSEEVYCLQK
ELKIKTHNLEETSEQNAILQHTLQQQQQMLQQETMRNGELEDTQSKLEKQVSKQEQELQKQRESSTEKLR
KMEEKYETAIREVDLKRQKIIELTGTARQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLD
QTKTELEKTTNSVKELERLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE
EKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE
GTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVIKEQE
DYIATQYKEVIDLGQELRLTQEQMQNTHSELVEARRQEVQAQREIERLAGELEDIKQLSKEKEAHGNRLA
EELGASQVREAHLEARMQAEIKKLSSEVDSLKEAYQIEMISHQENHAKWKLSAESQKTSVQQLNEQLEKA
KQELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELTRLQAKISGHEKTEDTKYLPAPFTTLTEIIP
DSQHPNFAKHSQISLFKCRKLRRSISASDLSFKSHGNDDLSEELLQDLKKMQFEQTSAIESGHKDLPLTH
SESFKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTATGLSQGGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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