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Report for CCDS39369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39369.1 Public Mus musculus 5 Kdelr2 23 108 98 CCDS HistoryNCBI Gene:66913Re-query CCDS DB by CCDS ID:39369.1Re-query CCDS DB by GeneID:66913See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110731.3 ENSMUSP00000106359.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110731.3Link to Ensembl Protein Viewer:ENSMUSP00000106359.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110731Re-query CCDS DB by Protein ID:ENSMUSP00000106359
Original member Current member NCBI NM_025841.4 NP_080117.1 Accepted alive Link to Nucleotide Sequence:NM_025841.4Link to Protein Sequence:NP_080117.1Re-query CCDS DB by Nucleotide ID:NM_025841Re-query CCDS DB by Protein ID:NP_080117Link to BLAST:NP_080117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080117.1 212 Q9CQM2 212 100% 0 0

Chromosomal Locations for CCDS 39369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143403962 143404052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143412491 143412591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143418050 143418208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143419440 143419692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143420801 143420835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAACATCTTCCGGCTGACTGGGGACCTGTCCCACCTGGCGGCCATCGTCATCCTACTGCTGAAGATCT
GGAAGACGCGCTCCTGTGCTGGGATCTCTGGGAAGAGTCAGCTCCTGTTCGCACTGGTCTTCACGACTCG
CTACCTGGACCTTTTCACTTCCTTCATTTCCTTATACAACACGTCTATGAAGCTTATCTACATTGCCTGC
TCCTATGCCACGGTGTACCTGATCTACATGAAATTTAAGGCCACCTATGATGGAAATCACGATACCTTCC
GAGTGGAGTTCCTGGTGGTTCCTGTAGGAGGCCTCTCATTTCTAGTCAATCATGACTTCTCTCCTCTTGA
GATCTTATGGACCTTCTCCATCTACCTGGAGTCCGTGGCCATCCTTCCACAGCTCTTTATGATCAGCAAG
ACTGGCGAGGCTGAGACCATCACCACCCACTACCTCTTCTTCCTGGGCCTCTACCGCGCTCTGTACCTGG
TCAACTGGATCTGGCGCTTCTACTTCGAGGGCTTCTTTGATCTCATTGCTGTGGTGGCTGGTGTCGTCCA
GACCATTCTCTACTGCGACTTCTTCTACTTGTACATTACAAAAGTACTCAAAGGGAAGAAGCTCAGCCTG
CCAGCCTAA

Translation (212 aa):
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIAC
SYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISK
TGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIAVVAGVVQTILYCDFFYLYITKVLKGKKLSL
PA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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