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Report for CCDS39401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39401.2 Public Mus musculus 5 Pan3 23 108 98 CCDS HistoryNCBI Gene:72587Re-query CCDS DB by CCDS ID:39401.2Re-query CCDS DB by GeneID:72587See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39401.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The upstream in-frame AUG is conserved in all mammals with available genomic sequences in this region. and results in a 146aa-longer protein, but the splice sites are unaffected.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39401.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031651.14 ENSMUSP00000031651.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031651.14Link to Ensembl Protein Viewer:ENSMUSP00000031651.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031651Re-query CCDS DB by Protein ID:ENSMUSP00000031651
Original member NCBI NM_028291.5 NP_082567.3 Updated not alive Link to Nucleotide Sequence:NM_028291.5Link to Protein Sequence:NP_082567.3Re-query CCDS DB by Nucleotide ID:NM_028291Re-query CCDS DB by Protein ID:NP_082567
Current member NCBI NM_028291.6 NP_082567.3 Accepted alive Link to Nucleotide Sequence:NM_028291.6Link to Protein Sequence:NP_082567.3Re-query CCDS DB by Nucleotide ID:NM_028291Re-query CCDS DB by Protein ID:NP_082567Link to BLAST:NP_082567.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082567.3 837 Q640Q5-1 837 100% 0 0

Chromosomal Locations for CCDS 39401.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147430580 147431009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147450653 147450774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147453252 147453318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147455118 147455188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147488111 147488258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147519505 147519752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147521830 147521934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147523176 147523233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147526519 147526680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147526925 147527041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147527129 147527230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147529955 147530120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147531217 147531307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147536401 147536540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147539243 147539372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147539742 147539806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147543070 147543208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147545606 147545735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147546365 147546387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGAACAGTGGCGGCGGCGGTGGCCTCCCGCCGCCCTCGGCCGCTGCCTCGCCGTCGTCGTCCTCGCTGG
CG
GCGGCCGTGGCGGTGGCGGTGGCGGCCTCGTCGGGCGTCGGGGGCGTCCCCGGCGGGCCGGCGGCGGC
G
GCGGGCGTGAAGCTCAAGTACTGCCGCTACTACGCCAAGGACAAGACGTGCTTCTACGGCGAGGAGTGT
CAG
TTCCTGCACGAGGACCCAGCCGCCGGCGCGGCCCCGGGGCTTGGCCTCCATAGCAACAGCGTCCCGC
TG
GCGCTAGCGGCCGCGGCCGGGGCCGCCTTTCCTCCGGGAGCGCTCCCGGGCGGGGGAGCGGGGCCGCC
C
GCGGGGCCCAAGAAGCCGGAGCTGGGCGTCCCGGGGGCGGCGACCGCGGGCGGCGGACTCGATGGCCCG
CGG
GTGGCGATTCCGGGAATGGATGGAGGTGCTTTAACTGATGCGAGTCTCACAGAGTCCTATTTCAGCA
CC
AGCTTTATTGGAGTCAATGGATTTGGAAGCCCTGTAGAAACAAAGTATCCCTTGATGCAGAGAATGAC
T
AGTAGTAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAGCCATACACAGGCCACGATCTTCTGACT
TCA
TCTGCTTCATCCTTGTTTAATGACTTCGGTGCCCTCAACATCTCCCAGAGAAGGAAGACACCAAATC
CT
ACTGCAAGCGAATTTATACCTAAAGGAGGATCAACCTCCAGGCTGAGTAACGTGTCCCAGTCAAATAT
G
TCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGTCCTGCTACTGCTGGATTAGCACCAGGA
ATG
TCACTGTCTGCTGGATCTTCCCCTCTCCATTCCCCCAAAATTACTCCACACACCTCTCCTGCTCCTA
GA
AGAAGAAGCCACACTCCAAACCCAGCAAGTTTCATGGTGCCGCCTAGTGCCTCCACTCCTGCCAATAA
C
CCTGCTCCTCAGCCTCCGTCCTCTGGTCAGGTGATCCAGAAGGAGACTGTCGGGGGGACGACTTACTTC
TAT
ACAGATACAACCCCAGCACCTTTGACTGGAATGGTATTTCCAAACTATCATATTTATCCTCCAACCG
CA
CCTCATGTTGCTTATATGCAACCAAAAGCAAATGCACCTTCCTTCTTCATGGCCGACGAGCTCCGACA
G
GAGCTGATCAACAGACATTTAATAACGATGGCTCAAATTGACCAAGCAGATATGCCAGCAGTCCCCACA
GAA
GTTGACAGCTACCATAGCCTGTTCCCTCTAGAACCACTGCCACCTCCCAACCGGATACAGAAATCAA
GT
AATTTTGGATATATCACGTCTTGCTACAAAGCTGTAAATAGCAAAGATGATCTGCCATATTGCCTTCG
G
AGGATACATGGTTTTCGTCTTGTTAACACAAAGTGCATGGTGTTGGTTGATATGTGGAAAAAAATTCAG
CAC
TCAAATATTGTAACTCTGCGTGAAGTGTTTACCACTAAAGCATTTGCCGAGCCTTCTCTGGTGTTCG
CC
TATGATTTCCATGCTGGAGGAGAAACTATGATGAGCAGACACTTTAACGACCCGAATTCTGATGCCTA
C
TTCACAAAGAGGAAGTGGGGCCAGCACGATGGACCACTGCCCAGGCAGCATGCTGGATTGTTACCAGAG
TCT
CTCATCTGGGCATACATTGTACAGCTGAGTTCTGCTCTGCGGACCATTCATACAGCAGGTTTGGCCT
GT
AGAGTAATGGACCCAACGAAGATTCTGATAACCAGCAAAACAAGGTTACGAGTAAATTGTGTAGGAGT
C
TTTGATGTTTTAACATTTGATAACAGTCAAAATAATAATCCTTTGGCATTAATGGCTCAGTACCAGCAA
GCA
GATCTGATATCATTAGGAAAAGTTGTGTTGGCTTTGGCTTGCAACTCTTTGGCAGGAATTCAGCGAG
AA
AATTTACAGAAAGCCATGGAATTGGTGACAATCAACTACTCCTCTGACCTGAAGAACCTCATCTTGTA
C
TTGTTGACTGACCAAAACAGGATGCGGAGTGTGAATGACATCATGCCCATGATTGGTGCTCGGTTTTAC
ACT
CAATTGGATGCTGCTCAAATGAGAAATGATGTTATCGAGGAAGACCTTGCTAAGGAGGTTCAAAATG
GA
AGACTGTTTAGGCTTCTAGCAAAATTGGGAACAATCAACGAGAGGCCGGAGTTTCAGAAGGATCCAAC
C
TGGTCAGAGACTGGAGACAGATACCTGTTGAAACTCTTTAGAGATCATCTTTTTCATCAGGTGACAGAA
GCA
GGTGCTCCCTGGATCGACCTCAGTCACATCATTTCTTGTCTTAACAAGCTAGATGCTGGTGTGCCAG
AA
AAAATCAGCCTGATTTCCAGAGACGAGAAGAGCGTGCTGGTGGTGACATACAGTGACCTAAAACGCTG
C
TTTGAAAATACCTTTCAAGAACTGATTGCGGCTGCAAATGGTAACGATCGGAACAGTAACTGA


Translation (837 aa):
MNSGGGGGLPPPSAAASPSSSSLAAAVAVAVAASSGVGGVPGGPAAAAGVKLKYCRYYAKDKTCFYGEEC
Q
FLHEDPAAGAAPGLGLHSNSVPLALAAAAGAAFPPGALPGGGAGPPAGPKKPELGVPGAATAGGGLDGP
R
VA
IPGMDGGALTDASLTESYFSTSFIGVNGFGSPVETKYPLMQRMTSSSSSPSLLNDSAKPYTGHDLLT
S
SASSLFNDFGALNISQRRK
TPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPG
M
SLSAGSSPLHSPKITPHTSPAPRRRSHTPNPASFMVPPSASTPANNPAPQPPSSGQVIQKETVGGTTYF
Y
TDTTPAPLTGM
VFPNYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPT
E
VDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIH
GFRLVNTKCMVLVDMWKKIQ
H
SNIVTLREVFTTKAFAEP
SLVFAYDFHAGGETMMSRHFNDPNSDAYFTKRKWGQHDGPLPRQHAGLLPE
S
LIWAYIVQLSSALRTIHTAGLACRVMDPTKILITSKT
RLRVNCVGVFDVLTFDNSQNNNPLALMAQYQQ
A
DLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLI
LYLLTDQNRMRSVNDIMPMIGARFY
T
QLDAAQMRNDVIEEDLAK
EVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTE
A
GAPWIDLSHIISCLNK
LDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGNDRNSN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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