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Report for CCDS39433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39433.1 Public Mus musculus 6 Lsm8 23 108 98 CCDS HistoryNCBI Gene:76522Re-query CCDS DB by CCDS ID:39433.1Re-query CCDS DB by GeneID:76522See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39433.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056398.10 ENSMUSP00000057238.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056398.10Link to Ensembl Protein Viewer:ENSMUSP00000057238.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056398Re-query CCDS DB by Protein ID:ENSMUSP00000057238
Original member Current member NCBI NM_133939.1 NP_598700.1 Accepted alive Link to Nucleotide Sequence:NM_133939.1Link to Protein Sequence:NP_598700.1Re-query CCDS DB by Nucleotide ID:NM_133939Re-query CCDS DB by Protein ID:NP_598700Link to BLAST:NP_598700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598700.1 96 Q6ZWM4 96 100% 0 0

Chromosomal Locations for CCDS 39433.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18848733 18848763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18849626 18849666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18851636 18851763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18853601 18853691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGACGTCTGCTTTGGAGAACTACATCAACCGGACTGTGGCTGTTATTACTTCTGATGGCAGAATGATTG
TGGGAACACTAAAAGGTTTTGACCAGACCATTAACTTGATTTTGGATGAAAGCCATGAGCGGGTGTTCAG
CTCTTCACAGGGAGTAGAACAAGTGGTGTTGGGGTTATACATTGTGAGGGGCGACAATGTAGCAGTCATT
GGGGAAATAGATGAAGAGACGGATTCTGCACTCGACTTGGGGAACATCCGAGCAGAGCCTCTGAACTCCG
TAGCACACTGA

Translation (96 aa):
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI
GEIDEETDSALDLGNIRAEPLNSVAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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