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Report for CCDS3946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3946.1 Public Homo sapiens 5 C5orf34 24 110 108 CCDS HistoryNCBI Gene:375444Re-query CCDS DB by CCDS ID:3946.1Re-query CCDS DB by GeneID:375444See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306862.7 ENSP00000303490.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306862.7Link to Ensembl Protein Viewer:ENSP00000303490.2Re-query CCDS DB by Nucleotide ID:ENST00000306862Re-query CCDS DB by Protein ID:ENSP00000303490
Original member Current member NCBI NM_198566.4 NP_940968.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198566.4Link to Protein Sequence:NP_940968.1Re-query CCDS DB by Nucleotide ID:NM_198566Re-query CCDS DB by Protein ID:NP_940968Link to BLAST:NP_940968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940968.1 638 Q96MH7 638 100% 0 0

Chromosomal Locations for CCDS 3946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43486915 43487111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43487909 43487949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43490631 43490729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43492215 43492309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43492720 43492890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43493543 43493612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43494510 43494601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43502372 43502495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43503665 43503760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43505748 43506394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43508577 43508666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43509145 43509339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGCAGCTGAACTGCGAATGATACTTTATGAAGATGATTCAGTACAAGTACAATATGTTGATGGTTCCA
CATTGCAACTTTCTCCCTGTGGCTCTGAATTTTTATTTGAAAAGTCACCACCTGTTTCAGCACATCCTTT
AGAACAACCAGAAAGAATTCGTCAAAGGACACATTTTGTCATTAGCACTTACAGAGAGCAACTACAGCGA
GCCCTAGATTTTCGAAACTCTTCAGCTACTTGCCCTTTTTTATCTGAAACCATCATACCTTCTGAAAGAA
AAAAGCATATCTTCATTGACATAACAGAAGTGAGATGGCCCAGTCTTGATACAGATGGTACCATGATATA
TATGGAGAGTGGCATTGTGAAGATAACATCTTTAGATGGTCATGCATACCTCTGCCTGCCCAGATCTCAG
CATGAATTTACAGTACATTTTTTGTGTAAAGTTAGCCAGAAGTCAGACTCATCTGCAGTGTTGTCAGAAA
CAAATAATAAAGCCCCAAAAGATAAACTAGTTGAAAAAACTGGCAAAATCTGTATACGTGGAAATTTACC
AGGACAGAGACTGAAGAATAAAGAAAATGAGTTTCATTGCCAGATCATGAAATCCAAAGAAACTTTAAAG
AAGATGAGTTGTGTAAATGGAACTGAAGGGAGGGAAGAGCTGCCTTCGCCTGGTACAAAGCACACATGTG
TATACACATGGGTCAAGCAGTGCTGGTCTGTGGCTGCCTGTCCAGAGGAATGGAAATATCCTTTGTCTTT
AGCACTTCATTTTCATAATAAAATCAGCAATATGTCTAAAATTGATGCACATATAACTCAGAGTAGATTT
TTAACTTCTGATATTTCAGAGGAAAGAGGAAAAGTGGTTTCTGTTCTTCCCAGGGCCCTGTCACTCAGCT
GTCCAGTCCCACACCTACACAGGTGGAATTTTTGTGATTCACTTTTACAGAGACAATCTGATGAATATTC
CTATCCTGAACTAGTGAAAATGGTTTGGTACAAAGGTGTTACATATAGACTTACCCATCAAAATATGAAC
TCAATAGAGATTTATTCTGGGGATGGATCTGTTTTCAAATCAGAAGGGGCTTATTTTGGGAACTATTTTA
CTTATTATTCTATTCAAGAAGGATCAGGAAAGAGAGAAGAGAAAACTTACTCAGTAAATAACCTTCCTCC
AGATAGACCGGGAAGTCCATTCACTGTCGGTTCTCTAATTAAACAGGCAACAAGAATTCTTCAACATTGT
GTGAAGATGAGACTTTCTTTAAGCCATAACTATCGTATATGCTGCTGGAAAATGGTACCTGGGATAAATG
ATAGCAATATACTGCCTTTGGTTTTGAAAGAGTCACTCATACCCAGTGTGGGAAGATTTCTTGCCTACTC
TGATGACAAAGTACATGCTATCTTTTTAGATGGCATTACTCTAACCCTAAATTGGAATTTCAGCTCTCCT
ATTGAGAAGAGACAGGTAAATCAAGGTCTTAACTTAGGTTGGTGTAAGTTAACTTTTCCTGATGGACAAG
AGCAGTTAATTCAGATTGAACACCCTGAACCATATGAAAGATATGTGACAACAGTAACATCATGGTGCAG
GAGACTGACCCAGACTAGTCCCAGAGAGATGCCCACTCATTCGTCATCTTCTGTTCTCCAAGAAAATTGG
TCTGTTGCTTCTGAACTTGAAAAGATACAGAAGTTTAACTTGCTACTAGAAAATAGTGGTATCCTAAACC
AGATTTCTAACAAGAAAAATGAACAACAGTCTTTTGATCATTATAAACCAGGATCTTCAGAAACCTTGCT
AGGAGAAGTTAATGAAAATAGAGTATCAATAGCATTGAAAAAAACCTCTGAAATCCTTCACGATATTGAC
TGTCTTCTATCAAACTCTAAAAAGTGA

Translation (638 aa):
MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQLQR
ALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMESGIVKITSLDGHAYLCLPRSQ
HEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLPGQRLKNKENEFHCQIMKSKETLK
KMSCVNGTEGREELPSPGTKHTCVYTWVKQCWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRF
LTSDISEERGKVVSVLPRALSLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMN
SIEIYSGDGSVFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHC
VKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGITLTLNWNFSSP
IEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENW
SVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKPGSSETLLGEVNENRVSIALKKTSEILHDID
CLLSNSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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