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Report for CCDS39518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39518.1 Public Mus musculus 6 Kcmf1 23 108 98 CCDS HistoryNCBI Gene:74287Re-query CCDS DB by CCDS ID:39518.1Re-query CCDS DB by GeneID:74287See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068697.10 ENSMUSP00000064410.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068697.10Link to Ensembl Protein Viewer:ENSMUSP00000064410.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000068697Re-query CCDS DB by Protein ID:ENSMUSP00000064410
Original member Current member NCBI NM_019715.2 NP_062689.2 Accepted alive Link to Nucleotide Sequence:NM_019715.2Link to Protein Sequence:NP_062689.2Re-query CCDS DB by Nucleotide ID:NM_019715Re-query CCDS DB by Protein ID:NP_062689Link to BLAST:NP_062689.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062689.2 381 Q80UY2-1 381 100% 0 0

Chromosomal Locations for CCDS 39518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72842869 72843130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72848225 72848507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72849444 72849618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72850383 72850484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72858774 72858913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72861758 72861925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72899614 72899629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGTCCCGACATGAAGGTGTCAGCTGTGATGCATGTTTAAAAGGAAATTTTCGAGGTCGCAGATATAAGT
GTTTAATTTGCTACGATTACGATCTTTGTGCATCTTGTTATGAAAGCGGGGCAACGACAACAAGGCATAC
AACTGACCACCCGATGCAGTGCATATTAACAAGGGTAGACTTTGATTTGTACTATGGTGGGGAAGCTTTC
TCTGTAGAGCAGCCACAGTCTTTTACTTGTCCCTATTGTGGAAAAATGGGCTACACGGAAACATCTCTTC
AAGAACATGTTACTTCTGAACACGCAGAAACATCAACAGAAGTGATTTGTCCCATATGTGCAGCGTTACC
TGGAGGAGATCCTAATCATGTCACAGATGACTTTGCAGCTCATCTGACACTTGAACACAGAGCCCCTAGA
GATTTAGATGAATCGAGTGGTGTTCGACATGTACGTAGAATGTTTCACCCTGGGCGGGGGCTAGGAGGCC
CTCGTGCTCGGAGATCAAACATGCACTTTACTAGCAGTTCTACTGGTGGACTCTCTTCTTCTCAGAGTTC
ATACTCTCCAAGCAGTAGGGAAGCCATGGATCCTATAGCTGAGCTGTTATCTCAGTTATCAGGAGTGAGA
CGTTCTGCAGGGGGACAGCTTAACTCTTCAGGCCCTTCCGCTTCTCAGTTGCAACAACTGCAGATGCAGC
TGCAGCTTGAGCGACAGCATGCACAGGCAGCCCGGCAACAACTGGAGACTGCTCGCAACGCAAGTCGGCG
CACTAACACAAGCAGCGTCACCACTACGATCACACAGGCCACGGCCACAGCCAACACAGCCAACACAGAG
AACAGCCCGCAGGCCCTCCACAACTCCCAGTTCCTGTTAACAAGGTTGAATGATCCCAAAATGTCTGAAG
CAGAGCGCCAGTCCATGGAGAGCGAGCGTGCGGACCGCAGCCTGTTTGTCCAGGAGCTCCTTCTTTCCAC
GTTAGTGCGCGAAGAGAGCTCGTCCTCAGATGAGGATGATCGGGGGGAGATGGCAGATTTTGGTGCTATG
GGCTGTGTAGATATTATGCCTTTAGATGTTGCTTTAGAAAACCTAAATTTAAAAGAGAGTAATAAAGGAA
ATGAGCCTCCACCACCTCCTCTTTGA

Translation (381 aa):
MSRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVDFDLYYGGEAF
SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEHRAPR
DLDESSGVRHVRRMFHPGRGLGGPRARRSNMHFTSSSTGGLSSSQSSYSPSSREAMDPIAELLSQLSGVR
RSAGGQLNSSGPSASQLQQLQMQLQLERQHAQAARQQLETARNASRRTNTSSVTTTITQATATANTANTE
NSPQALHNSQFLLTRLNDPKMSEAERQSMESERADRSLFVQELLLSTLVREESSSSDEDDRGEMADFGAM
GCVDIMPLDVALENLNLKESNKGNEPPPPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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