NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39578.1 Public Mus musculus 6 Foxp1 23 108 98 CCDS HistoryNCBI Gene:108655Re-query CCDS DB by CCDS ID:39578.1Re-query CCDS DB by GeneID:108655See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074346.11 ENSMUSP00000073953.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074346.11Link to Ensembl Protein Viewer:ENSMUSP00000073953.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074346Re-query CCDS DB by Protein ID:ENSMUSP00000073953
Original member Current member EBI ENSMUST00000113322.8 ENSMUSP00000108948.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113322.8Link to Ensembl Protein Viewer:ENSMUSP00000108948.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113322Re-query CCDS DB by Protein ID:ENSMUSP00000108948
Original member Current member NCBI NM_053202.2 NP_444432.1 Accepted alive Link to Nucleotide Sequence:NM_053202.2Link to Protein Sequence:NP_444432.1Re-query CCDS DB by Nucleotide ID:NM_053202Re-query CCDS DB by Protein ID:NP_444432Link to BLAST:NP_444432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444432.1 705 P58462-1 705 100% 0 0

Chromosomal Locations for CCDS 39578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98930090 98930234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98935274 98935440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98939719 98939788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98941536 98941657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98944619 98944720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945347 98945426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945534 98945735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98954321 98954404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98966027 98966114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98978133 98978237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99003200 99003404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99009904 99010054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99015424 99015510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99016528 99016665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99075854 99076045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99162839 99163018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGATGCAAGAATCTGGGTCTGAGACAAAAAGTAACGGATCAGCCATCCAGAACGGGTCCAGCGGTGGCA
AC
CACTTACTAGAGTGCGGGGCACTTCGTGACACTCGGTCCAACGGAGAGGCACCAGCGGTGGACCTGGG
G
GCAGCCGACCTTGCCCACGTCCAGCAGCAGCAACAGCAGGCCCTGCAGGTGGCAAGGCAGCTCCTCCTT
CAG
CAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGC
AA
CAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAAGTTAGTGGATTAAAGTCTCCCAAGAGGAA
T
GACAAGCAACCAGCTCTTCAGGTTCCCGTGTCAGTGGCTATGATGACACCTCAGGTTATCACTCCTCAA
CAA
ATGCAGCAGATCCTCCAGCAGCAGGTGCTGAGCCCCCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGC
AG
GCCCTCATGCTTCAACAGCAGCTTCAAGAATTTTATAAAAAACAACAGGAACAGTTGCAGCTTCAACT
T
CTCCAACAGCAACATGCTGGAAAACAGCCGAAAGAGCAGCAGGTGGCTACCCAGCAGTTGGCTTTCCAG
CAG
CAGCTTCTCCAGATGCAGCAGCTGCAGCAGCAGCACCTCTTGTCTCTCCAGCGCCAAGGCCTCCTAA
CA
ATTCAGCCGGGGCAGCCTGCCCTTCCCCTCCAACCCCTCGCTCAAGGCATGATTCCAACGGAACTGCA
G
CAGCTCTGGAAAGAAGTGACAAGTGCCCACACTGCAGAGGAAACCACAAGCAGCAACCACAGCAGCCTA
GAC
CTGACCAGCACATGTGTCTCGTCCTCGGCACCTTCCAAGTCCTCCCTAATCATGAACCCGCATGCCT
CT
ACCAATGGACAGCTCTCGGTCCACACTCCCAAAAGGGAAAGCTTGTCCCACGAGGAGCACCCCCACAG
C
CACCCTCTCTATGGACATGGCGTATGCAAGTGGCCAGGCTGTGAGGCGGTTTGTGACGACTTCCCAGCC
TTT
CTAAAACATCTCAACAGTGAGCATGCGCTGGACGATAGAAGCACAGCTCAATGTAGAGTACAAATGC
AG
GTTGTACAGCAGTTAGAGCTACAGCTTGCAAAAGACAAAGAGCGCCTGCAAGCCATGATGACCCACCT
G
CATGTGAAGTCTACAGAACCCAAAGCTGCCCCTCAGCCCCTGAATCTGGTATCAAGTGTCACCCTCTCC
AAG
TCTGCCTCAGAGGCTTCTCCACAGAGCTTACCTCATACTCCAACAACCCCCACCGCCCCCCTGACTC
CT
GTCACCCAAGGCCCCTCCGTCATCACCACCACCAGCATGCACACGGTGGGACCTATCCGCAGGCGGTA
C
TCAGACAAATACAACGTGCCCATTTCTTCAGCAGATATTGCGCAGAACCAAGAATTTTATAAGAACGCG
GAA
GTTAGACCACCATTTACATATGCATCTTTAATCAGGCAGGCCATTCTCGAATCTCCAGAAAAGCAGC
TA
ACACTAAACGAAATCTATAACTGGTTCACACGAATGTTTGCTTACTTCCGACGCAATGCAGCCACGTG
G
AAGAATGCAGTGCGTCATAATCTTAGTCTCCACAAGTGTTTTGTGCGAGTAGAGAACGTTAAAGGGGCA
GTA
TGGACAGTGGATGAAGTAGAGTTCCAAAAACGGAGGCCACAAAAGATCAGTGGTAACCCTTCCCTTA
TT
AAAAACATGCAGAGCAGCCACGCCTACTGCACACCTCTCAATGCAGCTTTACAGGCTTCCATGGCTGA
G
AATAGTATACCTCTGTACACTACCGCTTCCATGGGAAATCCCACTCTGGGCAGCCTGGCCAGTGCCATC
CGG
GAGGAGCTGAACGGGGCCATGGAGCACACCAACAGCAACGAGAGTGACAGCAGTCCAGGCAGATCCC
CT
ATGCAAGCTGTGCACCCCATACACGTCAAAGAAGAACCCCTCGACCCCGAGGAAGCTGAAGGCCCTCT
G
TCCTTAGTGACAACAGCCAACCACAGTCCAGATTTTGACCATGACAGAGATTACGAAGACGAACCAGTA
AAT
GAGGACATGGAGTGA


Translation (705 aa):
MMQESGSETKSNGSAIQNGSSGGNHLLECGALRDTRSNGEAPAVDLGAADLAHVQQQQQQALQVARQLLL
Q
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVSGLKSPKRNDKQPALQ
VPVSVAMMTPQVITPQ
Q
MQQILQQQVLSPQQLQVLLQQQQALMLQQ
QLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQVATQQLAFQ
Q
QLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQ
GMIPTELQQLWKEVTSAHTAEETTSSNHSSL
D
LTSTCVSSSAPSKSSLIMNPHASTNGQLSVHTPKRE
SLSHEEHPHSHPLYGHGVCKWPGCEAVCDDFPA
F
L
KHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLS
K
SASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISS
ADIAQNQEFYKNA
E
VRPPFTYASLIRQ
AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGA
V
WTVDEVEFQKRRPQKIS
GNPSLIKNMQSSHAYCTPLNAALQASMAENSIPLYTTASMGNPTLGSLASAI
R
EELNGAMEHTNSNESDSSPGRSPMQA
VHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPV
N
EDME




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser