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Report for CCDS39612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39612.1 Public Mus musculus 6 Ninj2 23 108 98 CCDS HistoryNCBI Gene:29862Re-query CCDS DB by CCDS ID:39612.1Re-query CCDS DB by GeneID:29862See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112711.8 ENSMUSP00000108331.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112711.8Link to Ensembl Protein Viewer:ENSMUSP00000108331.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112711Re-query CCDS DB by Protein ID:ENSMUSP00000108331
Original member NCBI NM_016718.2 NP_057927.1 Updated not alive Link to Nucleotide Sequence:NM_016718.2Link to Protein Sequence:NP_057927.1Re-query CCDS DB by Nucleotide ID:NM_016718Re-query CCDS DB by Protein ID:NP_057927
Current member NCBI NM_016718.3 NP_057927.1 Accepted alive Link to Nucleotide Sequence:NM_016718.3Link to Protein Sequence:NP_057927.1Re-query CCDS DB by Nucleotide ID:NM_016718Re-query CCDS DB by Protein ID:NP_057927Link to BLAST:NP_057927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057927.1 143 Q9JL89 143 100% 0 0

Chromosomal Locations for CCDS 39612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120093426 120093458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120197903 120198134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120198643 120198809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGAGTCAGACCGAGAAACCATCCACCTTCAACACAGGCACTCCATGCGCGGAGGGAACCAGCGCATAG
ACCTGAACTTTTATGCCACCAAGAAGAGTGTGGCAGAGAGCATGCTAGACGTGGCGCTCTTTATGTCCAA
TGCCATGCGGCTGAAATCAGTGCTGCAGCAAGGGCCATTCGCGGAGTACTACACCACCCTAGTCACCCTC
ATCATTGTCTCTCTGCTCCTGCAAGTGGTCATTAGCCTCCTTCTTGTGTTCATCGCCATCCTGAACCTGA
ATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTTCATAACCGT
GGTCATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGC
AATCCTATTTGA

Translation (143 aa):
MESDRETIHLQHRHSMRGGNQRIDLNFYATKKSVAESMLDVALFMSNAMRLKSVLQQGPFAEYYTTLVTL
IIVSLLLQVVISLLLVFIAILNLNEVENQRHLNKLNNAATILVFITVVINIFITAFGAHHAASMAARTSS
NPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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