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Report for CCDS39681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39681.1 Public Mus musculus 6 Fam234b 23 108 98 CCDS HistoryNCBI Gene:74525Re-query CCDS DB by CCDS ID:39681.1Re-query CCDS DB by GeneID:74525See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111915.7 ENSMUSP00000107546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111915.7Link to Ensembl Protein Viewer:ENSMUSP00000107546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111915Re-query CCDS DB by Protein ID:ENSMUSP00000107546
Original member Current member NCBI NM_028982.4 NP_083258.2 Accepted alive Link to Nucleotide Sequence:NM_028982.4Link to Protein Sequence:NP_083258.2Re-query CCDS DB by Nucleotide ID:NM_028982Re-query CCDS DB by Protein ID:NP_083258Link to BLAST:NP_083258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083258.2 624 Q8BYI8-1 624 100% 0 0

Chromosomal Locations for CCDS 39681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135198065 135198101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135209033 135209431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135211835 135211933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135216886 135217077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135218679 135218809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135225140 135225287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135225656 135225797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135226850 135226993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135227153 135227234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135228413 135228568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135231621 135231738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135233256 135233476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135233979 135233984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGGCGACAGTGCTGTCCAGGGCTCTCAAGCTCCCGGGGAAGAAGAGCCCAGACCTCGGTGAGTACGACC
CCCTCACGCAGGCCGACAGTGATGAGAGCGAAGATGATCTCGTGCTTAACTTGCAGCAGAAGAATGGAGG
GGTCAAAAACGGGAAGAGTGCCCTGGGAGACCTGCCAGAGCCCGACTCAGATGCCGATGTGGCTGGGGCG
GCAAAGCCACATCTTTCAGAAGTCACCCCAGAGGGTTTCCCCTCGGAACCCCTTGGGGGCCTGGAGCAGA
AGGCCACCTCTCCCCTGGTGTCCTATGTGCGCACGTCTGTCTTCCTGCTGACACTGGTGATCTCCATGGT
TCTGGTATTGCTCTGCGCCTTCCTCATCCCCTGCCCTCCCAGAGACCTGCATAGCGCTTGGAGCCGGCGC
CTGGGCTCCCAAGGAGGCGGGGACCTGTCTCCCCTGGAGTTGGCTGACGTGAATAGAGATGGTCTGCGGG
ACGTGCTGCTCACCTTTGTGACAACCAGGAATGGGACTGAAGGAGGTGTTGGCTCACAACCAACTGCAGA
TCTGGTGTGCCTTTCGGGGATGAACGGCAGCACACTGTGGTCCAGTCCCCTCCCAGAGGAGGCTCAAGAT
GTCACATGCTTAGATCTGATACCAGGAAGTGTGGCCAAAACCATCTGCCTTGTGACGGGGACTCGCAAGA
TGCTCAGCGCATTCAATGCGACGTCAGGGAAAGTCCTCTGGACTCTGAACCCAAACCATCTGTCCAACGG
TACCTTGGCAGCCCCGGTTGTGGTGCTGCCAGACCTTGATGAAGATGGTGTCAGAGATCTGGTGGTGCTG
GCCATTGGAGAACTGCAGCCAGATCTGTGTTTTCTGCTGGTATCTGGCCGGACAGGGAGTCCTGTGGGCC
GACCTGTGAAGTATAACATCGTGGGAGTAGGGAATCTGATTGGTCCCCAGGTTTACATCACCGCCAGTGG
AGCTGTCTACATCCTGTTTGGCTTTGGAAACATACAAGCTGTCGCCCTGCGGGACATTTTTGTTCAGGCC
CAAAATCGGGACAGCTCGCCACCCTCTCTGCAGATAGAGGAGCCGGAGTGGGAGAAGCACAGATCTGTCA
ACCTTTCAGAGCTCATCGATGTTTACAGTGATGGAGTTGAGCTTCTCCAGTTGGTGAAGGCGCCAGATTC
CAACAGCAGCAGCCTCCTGATTACAACCCGACAAGGCCTGGTCCTGCTTAGAGGACAAGATCTTACGCCT
CATTGGAAACTGAACCTTCAGGGCCTGCGCAGCCAGCCCACTCCTGGGTATTTCACTGATGACCAGACAT
TGGACTTCCTTCTGCAGACACAAGATGGAGATGGGATGAAAAAGATGACAGTGGTAGATGGAGGTTCTGG
CTCCATCGTCTGGAGTTACAGTATTCCATGTCACATGAAGGAAACGCCAACCACTTCTGCAATTACTTCA
GACCAGAAGTCTGTCTTCCTCTTCTGGGCAGAGGCACTGACTGCTGCATCTCTCAGTTCTGACGACAGCT
CAGGAGCGGAGCCTCCTGGCCTTTACCACCTTTACCTCCTGCACCCAGCCTTCCCCTCCATCCTCCTGGA
CCTGAGCAACACCACTGGCATAGTGACAGCTTCGGAGGTTGGAATCAACGACATCTGGAAAGATGCCTTT
TATGTCACCAGGACAACAGGGATGAGCCCTGAAGGACACCCTACCTCTCTGGTGGTCAGCAAGCTTAGCC
TGCGCTGGGCACTCATGGAAGGCCAGATGGTCCAGCTGAAGGAGACCACCCCTAAAATTGGCCGTGGGGA
ACTGCGAAGATTCCTGTCTAGGATAAAGTTTGTTGATTCTCCCTACCAGATCTAG

Translation (624 aa):
MATVLSRALKLPGKKSPDLGEYDPLTQADSDESEDDLVLNLQQKNGGVKNGKSALGDLPEPDSDADVAGA
AKPHLSEVTPEGFPSEPLGGLEQKATSPLVSYVRTSVFLLTLVISMVLVLLCAFLIPCPPRDLHSAWSRR
LGSQGGGDLSPLELADVNRDGLRDVLLTFVTTRNGTEGGVGSQPTADLVCLSGMNGSTLWSSPLPEEAQD
VTCLDLIPGSVAKTICLVTGTRKMLSAFNATSGKVLWTLNPNHLSNGTLAAPVVVLPDLDEDGVRDLVVL
AIGELQPDLCFLLVSGRTGSPVGRPVKYNIVGVGNLIGPQVYITASGAVYILFGFGNIQAVALRDIFVQA
QNRDSSPPSLQIEEPEWEKHRSVNLSELIDVYSDGVELLQLVKAPDSNSSSLLITTRQGLVLLRGQDLTP
HWKLNLQGLRSQPTPGYFTDDQTLDFLLQTQDGDGMKKMTVVDGGSGSIVWSYSIPCHMKETPTTSAITS
DQKSVFLFWAEALTAASLSSDDSSGAEPPGLYHLYLLHPAFPSILLDLSNTTGIVTASEVGINDIWKDAF
YVTRTTGMSPEGHPTSLVVSKLSLRWALMEGQMVQLKETTPKIGRGELRRFLSRIKFVDSPYQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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