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Report for CCDS39710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39710.1 Public Mus musculus 6 Ints13 23 108 98 CCDS HistoryNCBI Gene:71177Re-query CCDS DB by CCDS ID:39710.1Re-query CCDS DB by GeneID:71177See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032427.14 ENSMUSP00000032427.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032427.14Link to Ensembl Protein Viewer:ENSMUSP00000032427.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032427Re-query CCDS DB by Protein ID:ENSMUSP00000032427
Original member Current member NCBI NM_138757.2 NP_620096.2 Accepted alive Link to Nucleotide Sequence:NM_138757.2Link to Protein Sequence:NP_620096.2Re-query CCDS DB by Nucleotide ID:NM_138757Re-query CCDS DB by Protein ID:NP_620096Link to BLAST:NP_620096.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620096.2 732 Q8QZV7 732 100% 0 0

Chromosomal Locations for CCDS 39710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146549946 146549985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146550087 146550164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146550639 146550774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146552372 146552511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146553984 146554214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146554492 146554646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146554928 146555098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146556131 146556309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146557251 146557340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146557533 146557622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146560126 146560210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146561729 146561857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146563427 146563517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146565628 146565708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146566493 146566695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146574702 146574776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146576225 146576449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGAAGATTTTTTCTGAATCTCATAAAACAGTGTTTGTTGTGGATCACTGCCCATACATGGCAGAATCCT
GTAGGCAGCATGTGGAGTTTGATATGCTGGTGAAGAACAGGACCCAAGGCATCATCCCTTTGGCTCCCAT
CTCCAAATCCTTGTGGACTTGCTCAGTAGAATCTTCCATGGAATATTGTAGAATAATGTATGACATATTT
CCTTTCAAAAAGCTGGTGAATTTCATTGTTAGTGATTCGGGAGCACATGTTTTAAATTCTTGGACTCAAG
AAGACCAAAACTTACAGGAGCTAATGGCAGCACTAGCTACAGTGGGGCCTCCTAACCCTCGGGCAGATCC
AGAGTGCTGCAGCATCCTGCATGGTCTTGTTGCAGCAGTGGAAACCCTTTGCAAGATTACCGAATACCAG
CATGAGGCTCGCACTTTACTCATGGAGAATGCAGAACGAGTTGGGAATAGAGGACGGATAATCTGCATCA
CAAATGCAAAAAGTGATAGTCATGTCCGAATGCTCGAAGATTGTGTCCAGGAAACAATTCATGAGCATAA
CAAGCTTGCTGCAAATTCAGATCATCTCATGCAGATTCAAAAATGTGAGTTGGTCTTGATTCACACCTAC
CCAGTTGGTGAAGATAGCCTTGTGTCTGACCGTCCTAAAAAAGAATTGTCCCCAGTTTTGACCAGTGAAG
TCCACAGTGTCCGAGCTGGGCGGCATCTTGCTACCAAGTTGAATGTTCTAGTACAGCAACATTTTGACTT
GGCTTCAACGACCATCACAAACATTCCTATGAAGGAAGAGCAGCATGCCAACACATCTGCCAACTATGAC
GTGGAGCTACTTCATCACAAAGATGCACATGTAGATTTCCTGAGAAGTGGTGACAGCCACTCTGGGAGCA
GCAGCAGAGAAGGGCCATTTAAGGAGACAGTAACCCTGAAGTGGTGCACACCCAGGACCAACAGCATTGA
ATTGCACTATTGCACTGGAGCTTACCGGATTTCACCTGTGGATGTAAATAGTAGACCTTCTTCCTGCCTT
ACTAATTTCCTCCTCAATGGTCGGTCTGTGTTGCTGGAGCAGCCACGAAAGTCAGGCTCCAAAGTCATCA
GTCACATGCTTAGCAGCCATGGAGGAGAGATCTTTCTGCATGTCCTTAGCAGTTCTCGATCCATTCTGGA
AGATCCGCCTTCAATTAGTGAGGGCTGTGGAGGAAGAGTTACAGACTACCGGATTACAGATTTTGGTGAA
TTTATGAGGGAAAACAGGTTAACTCCTTTTCTAGACCCCAGATATAAAATCGATGCAAGTCTAGAGATCC
CGTTGGAGCGTGCAAAGGATCAGTTAGAAAAGCACACCCGTTACTGGCCCATGATTATTTCACAAACCAC
CATTTTCAACATGCAAGCGGTAGTTCCATTAGCTGGTGTCATTGTGAAAGAGTCTTTGACAGAAGAGGAT
GTGTTAAACTGTCAGAAGACCATATACAACTTAGTTGATATGGAAAGGAAGAATGACCCTCTTCCTGTTT
CTACAGTCGGTACCAGAGGAAAGGGACCTAAAAGAGATGAACAGTACCGGATCATGTGGAATGAACTAGA
GACTCTCGTCAGAGCCCATATCAGCAACTCTGAGAAGCATCAGAGAGTATTGGAGTGTCTAATGGCATGT
AGGAGCAAACCCCCAGAAGAAGAAGAGCGGAAGAAGCGAGGGAGGAAGAGGGAGGACAGGGAAGACAAGT
CGGAACAAGCAGGGAAGGAGCACGGCACGGAAAAGGCCCGGCCGGATGCAGACAGATTGAAAGGGATTTT
AGAACGAGGGAAAGAAGAGTTGGCTGAAGCAGAGGTCATAAAGGACTCACCTGATTCTCCAGAACCTCCA
AACAAAAAGCCCCTTGTTGAAACGGATGAGACACCACACATGGAAAAGTCTAAAGGGCCAGTGTCCTTAT
TATCCTTGTGGAGTAACAGAATAAACACTGCCAATTCCAGAAAGCACCAGGAGTTTGCTGGGCGTTTGAA
CTCTGTCAATAACAGAGCAGAGCTGTATCAACACCTTAAGGAGGAAAATGGTGAGGAGGTTGGACTGACT
GGAGGACCCCGAACTGCAATCCCTTTCTTAAAGTGCCCACGTTCTCCTGTTGTGAATAGGATGGAGACAA
CAGAAAATGGGAAAGCCAGCCGCCAGTGA

Translation (732 aa):
MKIFSESHKTVFVVDHCPYMAESCRQHVEFDMLVKNRTQGIIPLAPISKSLWTCSVESSMEYCRIMYDIF
PFKKLVNFIVSDSGAHVLNSWTQEDQNLQELMAALATVGPPNPRADPECCSILHGLVAAVETLCKITEYQ
HEARTLLMENAERVGNRGRIICITNAKSDSHVRMLEDCVQETIHEHNKLAANSDHLMQIQKCELVLIHTY
PVGEDSLVSDRPKKELSPVLTSEVHSVRAGRHLATKLNVLVQQHFDLASTTITNIPMKEEQHANTSANYD
VELLHHKDAHVDFLRSGDSHSGSSSREGPFKETVTLKWCTPRTNSIELHYCTGAYRISPVDVNSRPSSCL
TNFLLNGRSVLLEQPRKSGSKVISHMLSSHGGEIFLHVLSSSRSILEDPPSISEGCGGRVTDYRITDFGE
FMRENRLTPFLDPRYKIDASLEIPLERAKDQLEKHTRYWPMIISQTTIFNMQAVVPLAGVIVKESLTEED
VLNCQKTIYNLVDMERKNDPLPVSTVGTRGKGPKRDEQYRIMWNELETLVRAHISNSEKHQRVLECLMAC
RSKPPEEEERKKRGRKREDREDKSEQAGKEHGTEKARPDADRLKGILERGKEELAEAEVIKDSPDSPEPP
NKKPLVETDETPHMEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRAELYQHLKEENGEEVGLT
GGPRTAIPFLKCPRSPVVNRMETTENGKASRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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