NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39712.1 Public Mus musculus 6 Stk38l 23 108 98 CCDS HistoryNCBI Gene:232533Re-query CCDS DB by CCDS ID:39712.1Re-query CCDS DB by GeneID:232533See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001675.13 ENSMUSP00000001675.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001675.13Link to Ensembl Protein Viewer:ENSMUSP00000001675.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001675Re-query CCDS DB by Protein ID:ENSMUSP00000001675
Original member Current member NCBI NM_172734.3 NP_766322.1 Accepted alive Link to Nucleotide Sequence:NM_172734.3Link to Protein Sequence:NP_766322.1Re-query CCDS DB by Nucleotide ID:NM_172734Re-query CCDS DB by Protein ID:NP_766322Link to BLAST:NP_766322.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766322.1 464 Q7TSE6-1 464 100% 0 0

Chromosomal Locations for CCDS 39712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146758472 146758605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146760121 146760172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146766195 146766317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146766738 146766821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146767419 146767542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146768333 146768487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146768834 146768936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146769095 146769156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146771582 146771699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146772098 146772221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146773318 146773413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146775400 146775491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146775594 146775721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCAATGACGGCAGGGGCAACAACTACCTTTCCTATGAGCAACCATACCCGGGAAAGAGTAACTGTGG
CCAAGCTCACACTGGAGAATTTTTACAGCAACCTAATTTTACAGCATGAAGAGAGAGAAACCAGGCAGAA
GAAGTTAGAAGTGGCTATGGAAGAAGAAGGATTGGCAGATGAGGAGAAAAAGTTACGTCGATCGCAGCAT
GCTCGTAAAGAAACAGAGTTCTTACGCCTTAAGAGGACCAGACTTGGCCTAGATGACTTTGAGTCTCTGA
AGGTTATAGGAAGAGGAGCTTTCGGAGAGGTGCGGCTGGTCCAGAAGAAAGACACGGGGCACATCTATGC
CATGAAGATCCTGAGGAAAGCTGACATGCTTGAGAAAGAGCAGGTGGCTCATATCCGAGCAGAAAGGGAC
ATTTTGGTGGAAGCAGATGGAGCCTGGGTGGTGAAGATGTTCTACAGTTTTCAGGACAAACGGAATCTCT
ATCTCATCATGGAATTTCTTCCTGGAGGTGACATGATGACATTGCTGATGAAGAAGGACACCTTAACAGA
AGAAGAGACACAGTTCTACATCTCAGAGACTGTCTTGGCGATAGATGCAATTCACCAGCTGGGCTTCATC
CACCGGGACGTCAAACCAGACAACCTTTTACTGGATGCCAAGGGACATGTAAAATTATCTGATTTTGGTT
TGTGCACGGGGTTAAAGAAAGCTCACAGGACTGAATTCTACAGAAACCTCACACATAACCCGCCAAGCGA
CTTCTCATTTCAGAACATGAATTCAAAGCGGAAAGCAGAGACATGGAAGAAGAACAGGAGACAGCTGGCT
TACTCCACAGTTGGAACACCAGACTACATTGCTCCAGAAGTATTCATGCAGACTGGCTACAACAAATTGT
GTGACTGGTGGTCCTTGGGAGTGATTATGTACGAGATGCTAATAGGCTTTCCACCTTTCTGCTCTGAAAC
ACCACAAGAAACATACAGAAAAGTTATGAGCTGGAAGGAGACTCTGGCATTTCCTCCGGAAGTGCCCGTC
TCTGAGAAAGCCAAGGACTTGATTCTCAGATTTTGTACTGATTCTGAAAACAGAATTGGGAATGGTGGTG
TGGAAGAAATCAAAGGTCATCCGTTCTTTGAGGGTGTAGACTGGGGGCACATAAGGGAAAGACCAGCAGC
TATTCCTATAGAAATCCGGAGTATAGATGACACCTCAAACTTTGATGACTTCCCTGAGTCTGATATCTTA
CAGCCAGTGCCGAATACCACAGAGCCCGACTACAAATCCAAAGACTGGGTTTTTCTCAATTACACCTACA
AAAGGTTTGAAGGGCTGACCCAGAGAGGCTCCATTCCTACATACATGAAAGCTGGGAAGTTATGA

Translation (464 aa):
MAMTAGATTTFPMSNHTRERVTVAKLTLENFYSNLILQHEERETRQKKLEVAMEEEGLADEEKKLRRSQH
ARKETEFLRLKRTRLGLDDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERD
ILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYISETVLAIDAIHQLGFI
HRDVKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLA
YSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGFPPFCSETPQETYRKVMSWKETLAFPPEVPV
SEKAKDLILRFCTDSENRIGNGGVEEIKGHPFFEGVDWGHIRERPAAIPIEIRSIDDTSNFDDFPESDIL
QPVPNTTEPDYKSKDWVFLNYTYKRFEGLTQRGSIPTYMKAGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH