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Report for CCDS39717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39717.1 Public Mus musculus 6 Pthlh 23 108 98 CCDS HistoryNCBI Gene:19227Re-query CCDS DB by CCDS ID:39717.1Re-query CCDS DB by GeneID:19227See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052296.8 ENSMUSP00000051433.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052296.8Link to Ensembl Protein Viewer:ENSMUSP00000051433.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052296Re-query CCDS DB by Protein ID:ENSMUSP00000051433
Original member Current member EBI ENSMUST00000204197.1 ENSMUSP00000145509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204197.1Link to Ensembl Protein Viewer:ENSMUSP00000145509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204197Re-query CCDS DB by Protein ID:ENSMUSP00000145509
Original member Current member NCBI NM_008970.4 NP_032996.2 Accepted alive Link to Nucleotide Sequence:NM_008970.4Link to Protein Sequence:NP_032996.2Re-query CCDS DB by Nucleotide ID:NM_008970Re-query CCDS DB by Protein ID:NP_032996Link to BLAST:NP_032996.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032996.2 175 P22858 175 99.4286% 0 1

Chromosomal Locations for CCDS 39717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147252568 147252577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147256943 147257359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147263270 147263370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTGCGGAGGCTGGTTCAGCAGTGGAGTGTCCTGGTATTCCTGCTCAGCTACTCCGTGCCCTCCCGCG
GGCGTTCGGTGGAGGGGCTTGGCCGCAGGCTCAAACGCGCTGTGTCTGAACATCAGCTACTGCATGACAA
GGGCAAGTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCC
GAAATCAGAGCTACCTCGGAGGTGTCCCCCAACTCCAAACCTGCTCCCAACACCAAAAACCACCCCGTGC
GGTTTGGGTCAGACGATGAGGGCAGATACCTAACTCAGGAAACCAACAAGGTGGAGACGTACAAAGAACA
GCCACTCAAGACACCCGGGAAGAAGAAGAAAGGCAAGCCTGGGAAACGCAGAGAACAGGAGAAAAAGAAG
CGAAGGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGTGGCCTGCTTGAGGACCCCCTGCCCCACACCT
CCAGGCCCTCGCTGGAGCCCAGCTTAAGGACGCATTGA

Translation (175 aa):
MLRRLVQQWSVLVFLLSYSVPSRGRSVEGLGRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIHTA
EIRATSEVSPNSKPAPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRREQEKKK
RRTRSAWPSTAASGLLEDPLPHTSRPSLEPSLRTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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