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Report for CCDS39802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39802.1 Public Mus musculus 7 Apoc1 23 108 98 CCDS HistoryNCBI Gene:11812Re-query CCDS DB by CCDS ID:39802.1Re-query CCDS DB by GeneID:11812See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045035.11 ENSMUSP00000045571.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045035.11Link to Ensembl Protein Viewer:ENSMUSP00000045571.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045035Re-query CCDS DB by Protein ID:ENSMUSP00000045571
Original member Current member EBI ENSMUST00000108451.3 ENSMUSP00000104091.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108451.3Link to Ensembl Protein Viewer:ENSMUSP00000104091.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108451Re-query CCDS DB by Protein ID:ENSMUSP00000104091
Original member Current member NCBI NM_001110009.2 NP_001103479.1 Accepted alive Link to Nucleotide Sequence:NM_001110009.2Link to Protein Sequence:NP_001103479.1Re-query CCDS DB by Nucleotide ID:NM_001110009Re-query CCDS DB by Protein ID:NP_001103479Link to BLAST:NP_001103479.1
Original member Current member NCBI NM_007469.5 NP_031495.1 Accepted alive Link to Nucleotide Sequence:NM_007469.5Link to Protein Sequence:NP_031495.1Re-query CCDS DB by Nucleotide ID:NM_007469Re-query CCDS DB by Protein ID:NP_031495Link to BLAST:NP_031495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103479.1 88 P34928 88 100% 0 0
NP_031495.1 88 P34928 88 100% 0 0

Chromosomal Locations for CCDS 39802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19689576 19689636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19691888 19692035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19692411 19692468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (267 nt):
ATGAGGCTCTTCATCGCTCTTCCTGTCCTGATTGTGGTCGTAGCCATGACCTTGGAAGGCCCAGCCCCCG
CCCAGGCGGCCCCGGATTTGTCCGGAACATTGGAGAGCATACCGGATAAACTGAAGGAGTTTGGGAACAC
TTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGACCAAGACCCGGGCC
TGGTTCTCAGAGGCATTTGGCAAAGTGAAGGAGAAGTTGAAGACCACGTTCTCCTGA

Translation (88 aa):
MRLFIALPVLIVVVAMTLEGPAPAQAAPDLSGTLESIPDKLKEFGNTLEDKARAAIEHIKQKEILTKTRA
WFSEAFGKVKEKLKTTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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