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Report for CCDS39853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39853.1 Public Mus musculus 7 Zfp780b 23 108 98 CCDS HistoryNCBI Gene:338354Re-query CCDS DB by CCDS ID:39853.1Re-query CCDS DB by GeneID:338354See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081618.7 ENSMUSP00000080324.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081618.7Link to Ensembl Protein Viewer:ENSMUSP00000080324.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000081618Re-query CCDS DB by Protein ID:ENSMUSP00000080324
Original member Current member EBI ENSMUST00000206685.1 ENSMUSP00000146224.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206685.1Link to Ensembl Protein Viewer:ENSMUSP00000146224.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206685Re-query CCDS DB by Protein ID:ENSMUSP00000146224
Original member NCBI NM_001081021.1 NP_001074490.1 Updated not alive Link to Nucleotide Sequence:NM_001081021.1Link to Protein Sequence:NP_001074490.1Re-query CCDS DB by Nucleotide ID:NM_001081021Re-query CCDS DB by Protein ID:NP_001074490
Current member NCBI NM_001081021.2 NP_001074490.1 Accepted alive Link to Nucleotide Sequence:NM_001081021.2Link to Protein Sequence:NP_001074490.1Re-query CCDS DB by Nucleotide ID:NM_001081021Re-query CCDS DB by Protein ID:NP_001074490Link to BLAST:NP_001074490.1

Chromosomal Locations for CCDS 39853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27962708 27964869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27971623 27971721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27973719 27973845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27974753 27974785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGGCCAACTCTAATTCTCAAGACATGGTCTGTGGGTCAGTGACATTTAGGGATGTGGCTGTTGACTTCT
CTCAGGAGGAGTGGGCCTGCCTGGATGCTACTCAGAAGGTCTTATACAGGGACATGATGTTGGAGACCTA
CAGCAACCTGGTCGCAGTGGTGGGACGTTGCATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAG
AAAGAGCCCTGGATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAGACTTGGAGACAGATTATGATG
CTGAAAATATATCTCCAGAAAATCCTATTAATAATAAAAAATTCCTCAAACAGAGCATAAAGCAATTAAT
AACTTTTGACCCTAAGGACTCTAGTACTAGTATTGGCCCCAACTATAGTACATTCCATGGACTACAGGAT
TGTCAGAGTGATGCTGGTCAACAGATTACTAACAAGGAAGGAGTGCCTCCTCACACCTGCCAGACTCTTG
CTCACAATACAGAAAAACCATATGAATGTAAAGAGTGTGGGAAGTGCTTTGGTTGTAGGTCAACTCTTAC
TCAGCATCAGAGTATTCATACTGGAGAGAAGCCCTATGAATGTGAGGAGTGTGGGAAGGCCTTCAGACTC
CCCCAACAGCTCACAAGGCATCAGAAGTCTCACAGTGGTGAGAAACCTTTCGAGTGTAATGAATGTGGAA
AGGCTTTTCATCTTCCTGACCTGCTCAAGTACCATAAAACCATTCATACAGGTGAAAAACCATTTGAATG
CAGGGAATGTGGGAAGTCCTTCAACCGTGTCTCCAACCTTGTTGCACATAGGATTATCCATGCTGATGTG
AAACCATACAAATGTAGTGAGTGTGGGAAAGCCTTTAAGCGTCGCTCAAACCTCGTGCAACATCAGAAAA
CTCATTCTGATGAGAGACCCTTTCAGTGTAAGGACTGTGGGAAGGGCTTCATTGTTCTGGCTCAGCTCAC
AAGGCACCAGAACATTCACACTGGAGAGAAGTCATTTGAATGTCATGAATGTGGGAAGGCCTTCAGACTC
CCCCAACAGCTCACAAGACATCAGAAGTCTCACAGTGGTGAGAAACCTTTCAAATGTAATGAATGTGGAA
AGGCTTTTCATCTTCCTGACCTGCTCAAGTACCATAAAACCATTCATACAAGTACAAAACCATTTGAATG
CAGGGAATGTGGGAAGTCCTTCCATCGCATCTCTAACCTTGTTGAACATAGGCTTATTCATGCTGATGTG
AAACCACACAAGTGTAATGAGTGTGGGAAAGCCTTTAAAAGAAGCAAAAGCCTCATGCAACATCAGAAAA
TCCATTCTGGTGAGAGACCCTTTCAGTGCCAGGAGTGTGGGAAGGCCTTCATTGTTCTGACTCATCTCAC
TCGGCACCAGACCATTCATACTGGAGAGAAGTCATTTGAATGTAACGAATGTGGCAAGAAATTCAGAACT
GCCACACACCTTGTTATGCACCAGACTATTCACACTGGTGAGAAACCCTTTGAATGCAATGTATGTGGGA
AGGCTTTTCGGCTTCAGGTATACCTTTCTGAGCATCAGAAAATTCACATTGAAGAAAAACCCTTCAAGTG
TAAGCTCTGTGGGTCAGCCTTCAGACGTAAGTACCAACTTAATGAACATTACACAATTCACACTGATGAG
AAACCCTATCAGTGCAAGGAATGTGGCAAATGCTTTCGTCAAAGATCAAATTTTACTGAACATCAGAGTA
TTCACACTGGAAACAAACCCTTTGAGTGTAAAGAATGTGGGAAGTTCTTTAGACTCAATACACTTCTCAT
TCGTCATCAGAAATCTCACAGTAGTGAGAGACCTTATAAGTGTAAAGAATGTGGAAAGGCTTTCCATCTT
CCCAGTGAACTTAATAACCATCAAATTGTCCATACAAGTAACAGACCCTTTGAGTGCAAGGTATGTGGGA
AGTCCTTCAAGCGTGAATCCACTCTCATTCAACATAGTGTTATTCATGGTGGTGTGAAATCATATGAATG
TAATGAGTGTGGGAAAGCTTTTATTCATCGCTCAAGCCTGTTCCACCATCGGAAAATTCATTCTGATGAG
AAACCGTTTAAGTGTCAGGAGTGTGGAAAGGCCTTCGTTGTTCTGGCGTACCTCACTCGGCACCAGAGCA
TCCACACTGGAGAGAAATCATTTGAATGTCAGCAGTGTGGGTCAGCCTTCAGATACAAGTCCCAACTCAG
TAAACATCAGAGAAGTCATACTGATGTGAAACTCTTTCAGTGCATGGAAGGTGGAAATGACTTTGTCCAC
GGAACGAACCTTAGTATTCATCAGGGAATCCATACCAGTGAGAATCCCTTTCAATGTAATGAATATGGGG
AAGCTTTTAAATACCATTACCAGTTTCCTTGGACGTTTTAG

Translation (806 aa):
MANSNSQDMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRDMMLETYSNLVAVVGRCISKPDLIVLLEQE
KEPWMAVKEETDRPSPDLETDYDAENISPENPINNKKFLKQSIKQLITFDPKDSSTSIGPNYSTFHGLQD
CQSDAGQQITNKEGVPPHTCQTLAHNTEKPYECKECGKCFGCRSTLTQHQSIHTGEKPYECEECGKAFRL
PQQLTRHQKSHSGEKPFECNECGKAFHLPDLLKYHKTIHTGEKPFECRECGKSFNRVSNLVAHRIIHADV
KPYKCSECGKAFKRRSNLVQHQKTHSDERPFQCKDCGKGFIVLAQLTRHQNIHTGEKSFECHECGKAFRL
PQQLTRHQKSHSGEKPFKCNECGKAFHLPDLLKYHKTIHTSTKPFECRECGKSFHRISNLVEHRLIHADV
KPHKCNECGKAFKRSKSLMQHQKIHSGERPFQCQECGKAFIVLTHLTRHQTIHTGEKSFECNECGKKFRT
ATHLVMHQTIHTGEKPFECNVCGKAFRLQVYLSEHQKIHIEEKPFKCKLCGSAFRRKYQLNEHYTIHTDE
KPYQCKECGKCFRQRSNFTEHQSIHTGNKPFECKECGKFFRLNTLLIRHQKSHSSERPYKCKECGKAFHL
PSELNNHQIVHTSNRPFECKVCGKSFKRESTLIQHSVIHGGVKSYECNECGKAFIHRSSLFHHRKIHSDE
KPFKCQECGKAFVVLAYLTRHQSIHTGEKSFECQQCGSAFRYKSQLSKHQRSHTDVKLFQCMEGGNDFVH
GTNLSIHQGIHTSENPFQCNEYGEAFKYHYQFPWTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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