NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39877.1 Public Mus musculus 7 Zfp382 23 108 98 CCDS HistoryNCBI Gene:233060Re-query CCDS DB by CCDS ID:39877.1Re-query CCDS DB by GeneID:233060See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098596.10 ENSMUSP00000096196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098596.10Link to Ensembl Protein Viewer:ENSMUSP00000096196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098596Re-query CCDS DB by Protein ID:ENSMUSP00000096196
Original member Current member NCBI NM_001081007.2 NP_001074476.1 Accepted alive Link to Nucleotide Sequence:NM_001081007.2Link to Protein Sequence:NP_001074476.1Re-query CCDS DB by Nucleotide ID:NM_001081007Re-query CCDS DB by Protein ID:NP_001074476Link to BLAST:NP_001074476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074476.1 579 B2RXC5 579 100% 0 0

Chromosomal Locations for CCDS 39877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30122034 30122076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30125768 30125841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30130701 30130827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30131532 30131624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30133263 30134665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGGGAAGACCGGGGAGGAAACCGAGAGGCCGAGCCAGGCCTGGACTCTTCCCATTTCCAAAAGAGGAGC
TCAGACAAGGAGGCTCGTCTCCCGCAAACCTCAACGCCATGTCCAAGGGACCAGTGTCATTCAAGGACGT
GACCGTGGACTTCACCCAGGAGGAGTGGCAACGACTGGACCCTGCCCAGAAAGCCCTCTACAGGGATGTG
ATGCTAGAAAACTACTGTCATTTCATCTCTGTGGGATTTCACATAACAAAACCTGATATGATCCGCAAGT
TGGAACAAGGAGAGGAGCTGTGGACAGAGAGAATCTTTCCAAGTCAGAGCTATCTAGAAGAGGAGGAAGT
TTTGGTGAAGTTCAGTGACTACCAGGACAAGCCTCCTAAATCGATCGTAATCATCAAGCACAAGAAGCTA
ATTAAGGAGAGAAGCAGCGTTTATGGGGAAGCCCTAGGCAAGAACCGTGTTGTTTCCAAAACGCTATTTG
AGTATAAATCTGATGGAAAAGTTCTGAAAAATATCTCAGAATTCATCAGTAGAGATATAAACCCTGCAAT
GGGGAAGTTGGGTGGCAGTAAAGAATGGGAGGGATCAATCCTGACTTCGAAGCAGGAGAAAACGCATCCC
GCCTCGATCCTCCATAAACAAATCGGAAGGGCTCTGAGCTCTGAATGGGACCTCGCTCAGCACCAGAAGA
CCCAGATTCCAGAGCAGAGGTTTGAATATAATAAATGTGACAGCTCCTTCCTCATGACAGGAGTGGAATT
TCCACATGGCAGAGCTCACAGAGGAGGCGGGAACTTCAACTACAGTAAAGATGACATCACTCTTTTTGAA
AAGTCAGACCTTGGTATTCATCCACATGATCTTATGGAGAAGAAATGTTCTTCATACAACAAATATGGGG
AGCTCCTTTGCAGAAAGTCAGTGTTTGTTATGCACCCCAGCTCTCAGATGGACGAGAGGCCCTTCCAGTG
TCCTTACTGTGGGAACAGCTTTAGAAGGAAGTCCTACCTTATCGAGCACGAGCGGATCCACACAGGGGAG
AAGCCCTACATTTGCTGTCAGTGCGGGAGAGCCTTCCGTCAGAAGACGGCTCTGACACTCCATGAAAAAA
CACATACAGAGGGGAAACCCTATCTCTGTGTGGACTGTGGGAAGTCCTTCCGCCAGAAGGCAACCCTCAC
CAGGCACCACAAGGCGCACACAGGGGAGAAAGCCTACGAATGCACTCAGTGTGGAAGCGCCTTTGGAAAA
AAGTCATACCTGATCGACCATCAGAGAACTCACACAGGGGAGAAACCCTATCAGTGCACAGAGTGTGGGA
AGGCGTTTATCCAGAAGACAACACTCACGGTGCACCAGAGGACTCATACAGGGGAGAAGCCCTACATCTG
CAGCGAGTGTGGGAAGTCCTTCTGCCAGAAGACAACCCTGACCCTCCATCAGCGGATCCACACTGGGGAG
AAGCCCTACATCTGCAGTGACTGCGGGAAGTCCTTCCGCCAGAAGGCAATCCTCACTGTGCACTACAGAA
TACATACAGGAGAAAAGTCCAATGGCTGTCCCCAGTGTGGGAAAGCCTTCAGTAGGAAATCGAACCTCAT
TCGCCACCAGAAAATTCACACAGGAGAAAAACCCTATGAATGTCAAGAGTGTGGAAAATTCTTTAGCTGT
AAATCGAACCTCATTACCCACCAGAAAACTCACAAGACAGAAACCATGAGATTTCAGTGA

Translation (579 aa):
MGRPGRKPRGRARPGLFPFPKEELRQGGSSPANLNAMSKGPVSFKDVTVDFTQEEWQRLDPAQKALYRDV
MLENYCHFISVGFHITKPDMIRKLEQGEELWTERIFPSQSYLEEEEVLVKFSDYQDKPPKSIVIIKHKKL
IKERSSVYGEALGKNRVVSKTLFEYKSDGKVLKNISEFISRDINPAMGKLGGSKEWEGSILTSKQEKTHP
ASILHKQIGRALSSEWDLAQHQKTQIPEQRFEYNKCDSSFLMTGVEFPHGRAHRGGGNFNYSKDDITLFE
KSDLGIHPHDLMEKKCSSYNKYGELLCRKSVFVMHPSSQMDERPFQCPYCGNSFRRKSYLIEHERIHTGE
KPYICCQCGRAFRQKTALTLHEKTHTEGKPYLCVDCGKSFRQKATLTRHHKAHTGEKAYECTQCGSAFGK
KSYLIDHQRTHTGEKPYQCTECGKAFIQKTTLTVHQRTHTGEKPYICSECGKSFCQKTTLTLHQRIHTGE
KPYICSDCGKSFRQKAILTVHYRIHTGEKSNGCPQCGKAFSRKSNLIRHQKIHTGEKPYECQECGKFFSC
KSNLITHQKTHKTETMRFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH