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Report for CCDS39917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39917.1 Public Mus musculus 7 Gm5114 23 108 98 CCDS HistoryNCBI Gene:330513Re-query CCDS DB by CCDS ID:39917.1Re-query CCDS DB by GeneID:330513See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108017.1 ENSMUSP00000103652.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108017.1Link to Ensembl Protein Viewer:ENSMUSP00000103652.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108017Re-query CCDS DB by Protein ID:ENSMUSP00000103652
Original member Current member NCBI NM_177890.3 NP_808558.2 Accepted alive Link to Nucleotide Sequence:NM_177890.3Link to Protein Sequence:NP_808558.2Re-query CCDS DB by Nucleotide ID:NM_177890Re-query CCDS DB by Protein ID:NP_808558Link to BLAST:NP_808558.2

Chromosomal Locations for CCDS 39917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 39407617 39409424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39410655 39411416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39413007 39413013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGTCAGAAAATCTCCAAAGTTCACCTTTCTTTGGGACAGAAAGCACTCTGCACCCTTCTCTGCCTCTGC
TGAGCAACTCCATACAGCCTGCAGGAACGGTGTGCAACTTTTCTAGGGTCTCCACCCCAGATGTGAGTTC
AGCATGGCTTCTACCATCAGCATCCAGCACTTCTCTCCAGCCGCTCATGGGTAATGCCTATCTTAACCCA
CATGCTGGCACAACCATGCTGACAGTGCTAACAGAGCAGGGCCAGATTTCCACCTCAGCACCCTCCTATC
CAGGTGCTCTCAAGTGGGATTGCACTGGAAGCACACATAGGAGGGAAGATGCACTCCAGGACTTCAATAT
GACCCTCATTGACCAGGACACTACACTCTCCTCCCTGGCTGTGACAAACCAGTGTGATAAAATTTTAGAT
CCCAATGTCATAGTTCCTTTTTATCCAACACTGCCTGCCAGCTTTGTCCAGGTCACACCACCGCAGATGC
TAAGTCAAGAATACAGCCTGGCACCTTCCTACCAGGAAGGCAGCCAGGTCTATTACTATGAGCACAACAA
CCTGGGCCCTCTGATAACTGGAGAATTTGGGCAGTGTTTACAGCCCCATGGCTCTGTGTCTTACCCTGGG
AGTCAGACCTCTGTGCTCCAACCAGAGAAGGTGATGGTGCTACAGGAGATTCAGCCAAGGAATATCCAAA
TACCACTTTTTACCTCTGCCTTCTCCTATTCCACATCTGCTCAGTCCATGCCAGACAACGGTCTTCCCGT
GGTTCAAATGGAGATGTCCCTGGGATTGCCACCTTCAGGCCAGACACACTGTCAGCTGCAGAGTCCAGAA
CTCTGCAACACCAGTGTCCAGGTTTCCCAGATAAGGCCACCAGCTGTCAACGGGGACAGGGCATTAACAG
CCCCCATCCACAGTCCTTCACAGTTCCTAGCCTTGTGTCCAGCTCCAAGCCTGGAACAATCAGAGAACAA
AACCATGCCTGAGATAAAAGAGGGCACAAAAGAAAACCAAGACACACCAATCCTGACTTTGGAACACCCT
GACTTGCAGCAGCCTCTGCACTGCACTGACACTGAGAGCCTCAGGCAGAAGCCTGATTCTGATAATGCCC
ATTTGGGATGCATCTACATGGGTCCGAAAGAGCTTGTGGGGCTAGAGAAGGAGATTGGATCCAGCTTCGA
CTTTAAAGACATCACTAGGTTTGGGGCAGACATTCAACTTCCCCAACTCCTAAACACCCTCACAGACATA
GACCAAGATCAGTCCTGTGAAAACTGGAGAGTCACCAGTGGTCCCTCTGACCAGGTGAGGAAGAACAAAC
ATAAATCCTTTGAGTTGCTTGAGGGGGATCCTCAGGCCAAAATCCAGCACTGGGACCTGGTGGAGGGAGA
AGGGGCTGTGGGTGTTGCTGGGGCCAGTGACAGGGCTATTGACAACATGGCAAAGCACCCAGAGGGCAAA
GATCCCAAAGTGCCCCCCAGCAAGAACAGAAGAGCTAGAAAACAGCGGCAAGAAAGACCAAGTGTACCAG
AGAACACATCCAAGAAAACAGAGGAGCTTAAGCAGTCAAGGAACAGAGTCAAAGCAGAAGAGAAGCCCAC
CATCCCCAAGACCAAGAGGAAGAGGAACCCACCTGAGCTCAGTCAAAACAGCTTCAAGAAGCCTCGATCC
AACCTAGCAATGCACATGCTGGAGTCCGTGCAGGTCTTCCACCCACTCGGGAAGAAGATTGAGAAGAAAA
CTGGCATCTCTTCCTTCGGGGGTCTGCGAACCTCCACCAACAACAAAGATCCAGGCCCAAGCTCAGTTAC
TACAACAGTGTTAAACATGCCAGGTGAGGGCCAGGGTCCTCCCAAAAGCCCAGGGAAGCTTCAGAGAGCA
GAGAGCAGTGTTGACAAAGATTGTCTATCTCCATCCCAGTATGAGCTGCCCCCAGCTGGAAAGGTCAAGT
TAGTTCCTCTGCCTTTTCCAACTCTGGACAAGCCTCAATCCAGACCTGCTTCTAGAAAGCCCCTTTCCCT
GGCTTTACGCAGGCCCACTACAGTTTACCCTGTGCAGCCTCACTCTCACTCAGCTCAACCTACCACTCTC
AGGCCAGCCCAACCACCTCCTGTGAGCTCATCTTTGATAGCCTCTGCCAAGCCAGCTCCTCCAATTTCCT
CCAGTGCCACTGGACCTAATGTAACCAACCCCAACCAGTCTAGTGCTGTGAACCAGTTGGCCACCTCGAG
GCCTGTACCCTACAGAGCTTCATCTCACACATCATTCCAGAGAGAGCTTGTTTCTGCTGCCAGGAACAAG
GTACCATCACCTCCCAAACCTCAAACCCAATATCTGTTGCATGACTTCAGCCGCCAGCCCATTCCATGGA
AGAAAGTCGACATTCTGGGACCAGTTGTGTCACAACCCATCACAAAAGAGCAGAGGCCAGAGAGGGAGGC
CATGAAGAGGCGTGCTCAACAAGAGCGTGAGAATGCTGTCAAGAACCCCTCTACTGGGAAACTGCAGATT
TTCCTTCAGAGGGAGAGGGATATGGAAATTTCTCAATATTATGGCTATGCAATGTAA

Translation (858 aa):
MSENLQSSPFFGTESTLHPSLPLLSNSIQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMGNAYLNP
HAGTTMLTVLTEQGQISTSAPSYPGALKWDCTGSTHRREDALQDFNMTLIDQDTTLSSLAVTNQCDKILD
PNVIVPFYPTLPASFVQVTPPQMLSQEYSLAPSYQEGSQVYYYEHNNLGPLITGEFGQCLQPHGSVSYPG
SQTSVLQPEKVMVLQEIQPRNIQIPLFTSAFSYSTSAQSMPDNGLPVVQMEMSLGLPPSGQTHCQLQSPE
LCNTSVQVSQIRPPAVNGDRALTAPIHSPSQFLALCPAPSLEQSENKTMPEIKEGTKENQDTPILTLEHP
DLQQPLHCTDTESLRQKPDSDNAHLGCIYMGPKELVGLEKEIGSSFDFKDITRFGADIQLPQLLNTLTDI
DQDQSCENWRVTSGPSDQVRKNKHKSFELLEGDPQAKIQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGK
DPKVPPSKNRRARKQRQERPSVPENTSKKTEELKQSRNRVKAEEKPTIPKTKRKRNPPELSQNSFKKPRS
NLAMHMLESVQVFHPLGKKIEKKTGISSFGGLRTSTNNKDPGPSSVTTTVLNMPGEGQGPPKSPGKLQRA
ESSVDKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTTVYPVQPHSHSAQPTTL
RPAQPPPVSSSLIASAKPAPPISSSATGPNVTNPNQSSAVNQLATSRPVPYRASSHTSFQRELVSAARNK
VPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRAQQERENAVKNPSTGKLQI
FLQRERDMEISQYYGYAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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