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Report for CCDS39962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39962.1 Public Mus musculus 7 Syngr4 23 108 98 CCDS HistoryNCBI Gene:58867Re-query CCDS DB by CCDS ID:39962.1Re-query CCDS DB by GeneID:58867See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039049.15 ENSMUSP00000047035.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039049.15Link to Ensembl Protein Viewer:ENSMUSP00000047035.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039049Re-query CCDS DB by Protein ID:ENSMUSP00000047035
Original member Current member NCBI NM_021482.2 NP_067457.2 Accepted alive Link to Nucleotide Sequence:NM_021482.2Link to Protein Sequence:NP_067457.2Re-query CCDS DB by Nucleotide ID:NM_021482Re-query CCDS DB by Protein ID:NP_067457Link to BLAST:NP_067457.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067457.2 233 Q9Z1L2 233 99.5708% 0 1

Chromosomal Locations for CCDS 39962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45886895 45887125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45887367 45887506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45888612 45888849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45895691 45895783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCACCTCCCTGAAAGCCTCCACGACCTGGCAGACAATGAGACTGTGCGCTTTCTGAGGAGACCAAAGA
GCATCTCAAGGATCTTCGGAGGGGTCTTTTCCCTGGTCATCTTTTCCTCTCTACTAACTGATGGTTACCA
GAACAGAACAGAGTCTCCTCAGCTCCGCTGTGTCCTCAACAGCAACCACATGGCCTGTAGCTTTGCAGTA
GGAGCTGGCTTCCTGTCCTTTCTCAGCTGCTTGGTCTTCCTTGCCATAGATGCCTATGAGAGGCGCCTCG
TGGGCACCCGCTTTAAGATAGCCTTCCAGCTCTTGGACTTCATTCTGGCTGTCCTCTGGGCAGGTGTCTG
GTTTGTGGCTTTCTGCTTCCTAGCCAGCCAGTGGCAGCATTCGAAGTCCAAGCACTTCCTCTTGGGGAAC
AGCAGCGCCAAGGCAGCCATTGCCTTTTCTTTCTTCTCCGTCCCTGTCTGGATACTCCAGGCCTACCTAG
CCTTCCAGGACCTCCGAGACGAGGCTCCAGTCCCCTACAAGCGCTCCCTGGAGGAGGGTAGTGTGGTGCT
GAACACCCTCTCTCCATCATCCACCAGCCCCTCCAACCCTCCCATCACAGGCCCCAACAGTCTGAGTTAC
ACCAGCTCAGCCCTGTCCCCCTACATGACGACTCCAAAGGCCCCACGCCTGGCTATGATGCCAGACAGCT
AA

Translation (233 aa):
MHLPESLHDLADNETVRFLRRPKSISRIFGGVFSLVIFSSLLTDGYQNRTESPQLRCVLNSNHMACSFAV
GAGFLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILAVLWAGVWFVAFCFLASQWQHSKSKHFLLGN
SSAKAAIAFSFFSVPVWILQAYLAFQDLRDEAPVPYKRSLEEGSVVLNTLSPSSTSPSNPPITGPNSLSY
TSSALSPYMTTPKAPRLAMMPDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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