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Report for CCDS39985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39985.1 Public Mus musculus 7 Arrdc4 23 108 98 CCDS HistoryNCBI Gene:66412Re-query CCDS DB by CCDS ID:39985.1Re-query CCDS DB by GeneID:66412See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048068.14 ENSMUSP00000044578.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048068.14Link to Ensembl Protein Viewer:ENSMUSP00000044578.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048068Re-query CCDS DB by Protein ID:ENSMUSP00000044578
Original member Current member NCBI NM_001042592.2 NP_001036057.1 Accepted alive Link to Nucleotide Sequence:NM_001042592.2Link to Protein Sequence:NP_001036057.1Re-query CCDS DB by Nucleotide ID:NM_001042592Re-query CCDS DB by Protein ID:NP_001036057Link to BLAST:NP_001036057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036057.1 415 A0A0B4J1F4-1 415 100% 0 0

Chromosomal Locations for CCDS 39985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 68739477 68739533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68739885 68740039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68740955 68741117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68741645 68741901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68742572 68742674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68744782 68744929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68745145 68745211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 68748769 68749066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGGAGGCGAGGCGGGAGCCGATGGTCCTCGGGGCCGTGTCAAGAGCTTGGGGCTAGTGTTCGAAGATG
AGAGCAAGGGCTGCTACTCAAGCGGCGAGACAGTGGCCGGGCACGTGCTGCTGGAGGCGGCAGAGCCGGT
GGCCCTGCGCGGACTGCGCCTGGAGGCCCAGGGCCGTGCCACCTCTGCCTGGGGCCCGAGCGCTGGGGCC
AGGGTCTGCATCGGTGGGGGCTCTCCCGCAGCCTCCTCAGAAGTGGAATACTTGAACCTGCGGTTGAGTC
TGCTGGAGGCCCCAGCTGGTGAAGGTGTCACCTTGTTACAACCAGGAAAACACGAGTTTCCCTTTCGCTT
TCAGCTTCCGTCTGAACCTTTGGCAACATCGTTTACTGGGAAGTATGGCAGTATTCAGTACTGTGTGAGG
GCTGTTTTGGAACGACCCCAAGTTCCAGATCAGAGCGTCAGACGAGAGCTCCAGGTTGTCAGTCACGTGG
ATGTCAACACACCGCCCTTATTGACTCCTATGCTGAAGACGCAGGAGAAAATGGTTGGCTGTTGGCTTTT
CACCTCTGGTCCTGTGTCACTGAGCGTCAAGATCGAGAGAAAGGGCTACTGTAACGGAGAAGCTATCCCT
ATCTATGCAGAAATAGAAAATTGTTCATCTCGGCTGGTTGTTCCCAAGGCAGCCATATTCCAAACCCAGA
CGTACTTGGCTAGTGGAAAGACAAAGACAGTCCGGCACATGGTTGCCAATGTTCGAGGAAACCACATTGG
TTCTGGGAGTACGGACACCTGGAATGGGAAGATGCTGAAGATCCCACCTGTCACCCCATCCATCCTGGAT
TGCTGCATCATCAGAGTGGACTACTCCTTAGCTGTATACATTCATATCCCTGGTGCTAAAAGATTGATGC
TGGAGCTGCCTTTGGTTATTGGTACAATTCCATACAGTGGCTTTGGCCGCAGAAACAGCAGTGTCGCAAG
CCAGTTCAGTATGGACATGTGCTGGTTGGCACTGGCCCTACCGGAGCAGCCTGAAGCACCACCAAATTAT
GCAGATGTGGTATCGGAAGAAGAATTCTCCCGACACGTTCCTCCGTACCCTCAGCCCTCTGACTGTGACG
GGGAAGCCTGCTACTCAATGTTTGCCTGCATACAAGAATTCCGTTTCCAGCCTCCCCCCCTTTATTCAGA
GGTTGATCCACATCCTGGTGATGCCCAAGAGACCCAGCCTGTATCCTTCATTCTCTGA

Translation (415 aa):
MGGEAGADGPRGRVKSLGLVFEDESKGCYSSGETVAGHVLLEAAEPVALRGLRLEAQGRATSAWGPSAGA
RVCIGGGSPAASSEVEYLNLRLSLLEAPAGEGVTLLQPGKHEFPFRFQLPSEPLATSFTGKYGSIQYCVR
AVLERPQVPDQSVRRELQVVSHVDVNTPPLLTPMLKTQEKMVGCWLFTSGPVSLSVKIERKGYCNGEAIP
IYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMVANVRGNHIGSGSTDTWNGKMLKIPPVTPSILD
CCIIRVDYSLAVYIHIPGAKRLMLELPLVIGTIPYSGFGRRNSSVASQFSMDMCWLALALPEQPEAPPNY
ADVVSEEEFSRHVPPYPQPSDCDGEACYSMFACIQEFRFQPPPLYSEVDPHPGDAQETQPVSFIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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