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Report for CCDS4004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4004.1 Public Homo sapiens 5 RAD17 24 110 108 CCDS HistoryNCBI Gene:5884Re-query CCDS DB by CCDS ID:4004.1Re-query CCDS DB by GeneID:5884See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305138.8 ENSP00000303134.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305138.8Link to Ensembl Protein Viewer:ENSP00000303134.4Re-query CCDS DB by Nucleotide ID:ENST00000305138Re-query CCDS DB by Protein ID:ENSP00000303134
Original member Current member EBI ENST00000345306.10 ENSP00000311227.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345306.10Link to Ensembl Protein Viewer:ENSP00000311227.7Re-query CCDS DB by Nucleotide ID:ENST00000345306Re-query CCDS DB by Protein ID:ENSP00000311227
Original member Current member EBI ENST00000354312.7 ENSP00000346271.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354312.7Link to Ensembl Protein Viewer:ENSP00000346271.3Re-query CCDS DB by Nucleotide ID:ENST00000354312Re-query CCDS DB by Protein ID:ENSP00000346271
Original member Current member EBI ENST00000354868.10 ENSP00000346938.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354868.10Link to Ensembl Protein Viewer:ENSP00000346938.5Re-query CCDS DB by Nucleotide ID:ENST00000354868Re-query CCDS DB by Protein ID:ENSP00000346938
Original member Current member EBI ENST00000361732.6 ENSP00000355226.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361732.6Link to Ensembl Protein Viewer:ENSP00000355226.2Re-query CCDS DB by Nucleotide ID:ENST00000361732Re-query CCDS DB by Protein ID:ENSP00000355226
Original member Current member EBI ENST00000616683.4 ENSP00000482775.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616683.4Link to Ensembl Protein Viewer:ENSP00000482775.1Re-query CCDS DB by Nucleotide ID:ENST00000616683Re-query CCDS DB by Protein ID:ENSP00000482775
Original member Current member NCBI NM_001278622.1 NP_001265551.1 Accepted alive Link to Nucleotide Sequence:NM_001278622.1Link to Protein Sequence:NP_001265551.1Re-query CCDS DB by Nucleotide ID:NM_001278622Re-query CCDS DB by Protein ID:NP_001265551Link to BLAST:NP_001265551.1
Original member Current member NCBI NM_002873.1 NP_002864.1 Accepted alive Link to Nucleotide Sequence:NM_002873.1Link to Protein Sequence:NP_002864.1Re-query CCDS DB by Nucleotide ID:NM_002873Re-query CCDS DB by Protein ID:NP_002864Link to BLAST:NP_002864.1
Original member Current member NCBI NM_133338.3 NP_579916.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133338.3Link to Protein Sequence:NP_579916.1Re-query CCDS DB by Nucleotide ID:NM_133338Re-query CCDS DB by Protein ID:NP_579916Link to BLAST:NP_579916.1
Original member Current member NCBI NM_133342.3 NP_579920.1 Accepted alive Link to Nucleotide Sequence:NM_133342.3Link to Protein Sequence:NP_579920.1Re-query CCDS DB by Nucleotide ID:NM_133342Re-query CCDS DB by Protein ID:NP_579920Link to BLAST:NP_579920.1
Original member Current member NCBI NM_133343.2 NP_579921.1 Accepted alive Link to Nucleotide Sequence:NM_133343.2Link to Protein Sequence:NP_579921.1Re-query CCDS DB by Nucleotide ID:NM_133343Re-query CCDS DB by Protein ID:NP_579921Link to BLAST:NP_579921.1
Original member Current member NCBI NM_133344.3 NP_579922.1 Accepted alive Link to Nucleotide Sequence:NM_133344.3Link to Protein Sequence:NP_579922.1Re-query CCDS DB by Nucleotide ID:NM_133344Re-query CCDS DB by Protein ID:NP_579922Link to BLAST:NP_579922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265551.1 670 O75943-2 670 100% 0 0
NP_002864.1 670 O75943-2 670 100% 0 0
NP_579916.1 670 O75943-2 670 100% 0 0
NP_579920.1 670 O75943-2 670 100% 0 0
NP_579921.1 670 O75943-2 670 100% 0 0
NP_579922.1 670 O75943-2 670 100% 0 0

Chromosomal Locations for CCDS 4004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69372209 69372217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69373830 69374087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69374628 69374711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69381901 69382057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69384797 69384933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69386043 69386095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69386180 69386305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69386396 69386465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69389034 69389145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69391831 69392013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69393155 69393240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69393354 69393500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69396397 69396546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69400049 69400169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69410493 69410550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69414031 69414292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGAATCAGGTAACAGACTGGGTTGACCCATCATTTGATGATTTTCTAGAGTGTAGTGGCGTCTCTACTA
TTACTGCCACATCATTAGGTGTGAATAACTCAAGTCATAGAAGAAAAAATGGGCCTTCTACATTAGAAAG
CAGCAGATTTCCAGCGAGAAAAAGAGGAAATCTATCTTCCTTAGAACAGATTTATGGTTTAGAAAATTCA
AAAGAATATCTGTCTGAAAATGAACCATGGGTGGATAAATATAAACCAGAAACTCAGCATGAACTTGCTG
TGCATAAAAAGAAAATTGAAGAAGTCGAAACCTGGTTAAAAGCTCAAGTTTTAGAAAGGCAACCAAAACA
GGGTGGATCTATTTTATTAATAACAGGTCCTCCTGGATGTGGAAAGACAACGACCTTAAAAATACTATCA
AAGGAGCATGGTATTCAAGTACAAGAGTGGATTAATCCAGTTTTACCAGACTTCCAAAAAGATGATTTCA
AGGGGATGTTTAATACTGAATCAAGCTTCCATATGTTTCCCTATCAGTCTCAGATAGCAGTTTTCAAAGA
GTTTCTACTAAGAGCGACAAAGTATAACAAGTTACAAATGCTTGGAGATGATCTGAGAACTGATAAGAAG
ATAATTCTGGTTGAAGATTTACCTAACCAGTTTTATCGGGATTCTCATACTTTACATGAAGTTCTAAGGA
AGTATGTGAGGATTGGTCGATGTCCTCTTATATTTATAATCTCGGACAGTCTCAGTGGAGATAATAATCA
AAGGTTATTGTTTCCCAAAGAAATTCAGGAAGAGTGTTCTATCTCAAATATTAGTTTCAACCCTGTGGCA
CCAACAATTATGATGAAATTTCTTAATCGAATAGTGACTATAGAAGCTAACAAGAATGGAGGAAAAATTA
CTGTCCCTGACAAAACTTCTCTAGAGTTGCTCTGTCAGGGATGTTCTGGTGATATCAGAAGTGCAATAAA
CAGCCTCCAGTTTTCTTCTTCAAAAGGAGAAAACAACTTACGGCCAAGGAAAAAAGGAATGTCTTTAAAA
TCAGATGCTGTGCTGTCAAAATCAAAACGAAGAAAAAAACCTGATAGGGTTTTTGAAAATCAAGAGGTCC
AAGCTATTGGTGGCAAAGATGTTTCTCTGTTTCTCTTCAGAGCTTTGGGGAAAATTCTATATTGTAAAAG
AGCATCTTTAACAGAATTAGACTCACCTCGGTTGCCCTCTCATTTATCAGAATATGAACGGGATACATTA
CTTGTTGAACCTGAGGAGGTAGTAGAAATGTCACACATGCCTGGAGACTTATTTAATTTATATCTTCACC
AAAACTACATAGATTTCTTCATGGAAATTGATGATATTGTGAGAGCCAGTGAATTTCTGAGTTTTGCAGA
TATCCTCAGTGGTGACTGGAATACACGCTCTTTACTCAGGGAATATAGCACATCTATAGCTACGAGAGGT
GTGATGCATTCCAACAAAGCCCGAGGATATGCTCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGC
ACAAACCTCAGTGGTTTCTAATAAATAAAAAGTATCGGGAAAATTGCCTGGCAGCAAAAGCACTTTTTCC
TGACTTCTGCCTACCAGCTTTATGCCTCCAAACTCAGCTATTGCCATACCTTGCTCTACTAACCATTCCA
ATGAGAAATCAAGCTCAGATTTCTTTTATCCAAGATATTGGAAGGCTCCCTCTGAAGCGACACTTTGGAA
GATTGAAAATGGAAGCCCTGACTGACAGGGAACATGGAATGATAGACCCTGACAGCGGAGATGAAGCCCA
GCTTAATGGAGGACATTCTGCAGAGGAATCTCTGGGTGAACCCACTCAAGCCACTGTGCCGGAAACCTGG
TCTCTTCCTTTGAGTCAGAATAGTGCCAGTGAACTGCCTGCTAGCCAGCCCCAGCCCTTTTCAGCCCAAG
GAGACATGGAAGAAAACATAATAATAGAAGACTACGAGAGTGATGGGACATAG

Translation (670 aa):
MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSRFPARKRGNLSSLEQIYGLENS
KEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS
KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKK
IILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVA
PTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLK
SDAVLSKSKRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTL
LVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRG
VMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLALLTIP
MRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAEESLGEPTQATVPETW
SLPLSQNSASELPASQPQPFSAQGDMEENIIIEDYESDGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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