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Report for CCDS40091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40091.1 Public Mus musculus 7 Parva 23 108 98 CCDS HistoryNCBI Gene:57342Re-query CCDS DB by CCDS ID:40091.1Re-query CCDS DB by GeneID:57342See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033030.13 ENSMUSP00000033030.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033030.13Link to Ensembl Protein Viewer:ENSMUSP00000033030.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033030Re-query CCDS DB by Protein ID:ENSMUSP00000033030
Original member Current member EBI ENSMUST00000106643.7 ENSMUSP00000102254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106643.7Link to Ensembl Protein Viewer:ENSMUSP00000102254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106643Re-query CCDS DB by Protein ID:ENSMUSP00000102254
Original member NCBI NM_020606.5 NP_065631.3 Updated not alive Link to Nucleotide Sequence:NM_020606.5Link to Protein Sequence:NP_065631.3Re-query CCDS DB by Nucleotide ID:NM_020606Re-query CCDS DB by Protein ID:NP_065631
Current member NCBI NM_020606.6 NP_065631.3 Accepted alive Link to Nucleotide Sequence:NM_020606.6Link to Protein Sequence:NP_065631.3Re-query CCDS DB by Nucleotide ID:NM_020606Re-query CCDS DB by Protein ID:NP_065631Link to BLAST:NP_065631.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065631.3 372 Q9EPC1 372 100% 0 0

Chromosomal Locations for CCDS 40091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112427965 112428100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112544177 112544266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112544733 112544803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112547511 112547613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112559929 112560069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112567763 112567878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112572871 112572929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112575355 112575374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112576400 112576461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112576936 112577004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112579656 112579757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112580950 112581022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112588540 112588616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCACATCCCCACAGAAGTCGCCCTTGGTCCCCAAATCACCCACTCCCAAGTCGCCTCCGTCCCGCA
AGAAGGATGACTCGTTCTTGGGGAAACTCGGAGGGACGCTGGCCCGGAGGAAGAAAGCCAAAGAAGTATC
CGAGTTCCAGGAGGAAGGAATGAACGCCATCAACCTGCCTCTTAGCCCCATCTCCTTCGAGCTGGACCCC
GAGGACACTCTGCTGGAGGAGAATGAGGTCCGGACAATGGTCGATCCAAACTCACGCAATGACCCCAAAC
TTCAAGAGCTGATGAAGGTGCTCATCGACTGGATCAATGACGTATTGGTGGGAGAAAGAATCATCGTGAA
GGACCTCGCTGAAGATCTCTATGATGGCCAAGTCCTACAGAAGCTCTTCGAGAAACTGGAGAGTGAGAAG
CTCAACGTGGCCGAGGTTACGCAGTCGGAGATCGCCCAGAAACAGAAGCTACAGACTGTGCTGGAGAAGA
TCAATGAGACCCTGAAGCTTCCTCCCAGGAGCATCAAGTGGAACGTGGACTCTGTTCATGCCAAGAACCT
GGTTGCCATCCTCCACCTGCTGGTTGCTCTGTCTCAATATTTCCGGGCACCCATCCGACTCCCAGACCAT
GTTTCCATCCAAGTGGTTGTGGTCCAGAAACGAGAAGGGATCCTCCAGTCTCGACAAATCCAAGAGGAAA
TAACTGGTAACACAGAGGCCCTTTCCGGAAGGCATGAACGTGATGCCTTTGACACGCTGTTTGACCATGC
ACCAGACAAACTCAATGTGGTGAAGAAGACCCTCATCACGTTCGTGAACAAGCATCTGAATAAACTGAAC
TTGGAGGTCACAGAACTGGAGACACAGTTTGCAGATGGGGTTTACCTGGTGTTGCTCATGGGGCTCCTGG
AAGGCTACTTTGTACCCCTGCACAGCTTCTTCCTGACCCCAGACAGCTTTGAACAGAAGGTCCTGAATGT
CTCCTTTGCCTTTGAGCTCATGCAAGATGGAGGGCTGGAAAAGCCTAAACCGCGGCCAGAAGACATTGTC
AACTGTGACCTGAAGTCCACGCTGAGAGTGCTATACAACCTCTTCACCAAGTACCGGAATGTGGAGTGA

Translation (372 aa):
MATSPQKSPLVPKSPTPKSPPSRKKDDSFLGKLGGTLARRKKAKEVSEFQEEGMNAINLPLSPISFELDP
EDTLLEENEVRTMVDPNSRNDPKLQELMKVLIDWINDVLVGERIIVKDLAEDLYDGQVLQKLFEKLESEK
LNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKNLVAILHLLVALSQYFRAPIRLPDH
VSIQVVVVQKREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLN
LEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIV
NCDLKSTLRVLYNLFTKYRNVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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