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Report for CCDS40123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40123.1 Public Mus musculus 7 Katnip 23 108 98 CCDS HistoryNCBI Gene:233865Re-query CCDS DB by CCDS ID:40123.1Re-query CCDS DB by GeneID:233865See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069660.12 ENSMUSP00000065744.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069660.12Link to Ensembl Protein Viewer:ENSMUSP00000065744.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069660Re-query CCDS DB by Protein ID:ENSMUSP00000065744
Original member Current member NCBI NM_001081022.2 NP_001074491.1 Accepted alive Link to Nucleotide Sequence:NM_001081022.2Link to Protein Sequence:NP_001074491.1Re-query CCDS DB by Nucleotide ID:NM_001081022Re-query CCDS DB by Protein ID:NP_001074491Link to BLAST:NP_001074491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074491.1 1610 Q8C753-1 1610 100% 0 0

Chromosomal Locations for CCDS 40123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 125707942 125707948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125728309 125728364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125752973 125753049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125760301 125760470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125761752 125761849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125770572 125770703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125795216 125795480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125797574 125797705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125812780 125812949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125813593 125813658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125814781 125814887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125816579 125816681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125819968 125820183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125829729 125829866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125842580 125843453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125850299 125851003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125851937 125852145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125854560 125854638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125860528 125860705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125865245 125865410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125866326 125866483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125867603 125867667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125868739 125868849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125870643 125870782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872151 125872252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872687 125872847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872932 125873020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125873447 125873505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4833 nt):
ATGGACGGTCAGGCCCTGCGGAAGGTGGAGAGAAGCCGGTCCTGCTCTCAGGAGAGAAAGGAGGGTTACA
GTAAGGACATGGTGACAGACTTTGATGAGAAACATGATGAGTATTTAATATTGCTTCAGCAGAGAAACCG
GATACTAAAGCATTTGAAAGCCAAGGACCCTGTGCAGCTGAGGCTGGAACACTTGGAGCAAGGTTTCTCT
GTCTATGTCAATGGGGCCAACTCGGAGCTGAAGACATCACCACGGAAAGCTGTGCATACAGACTTCTCCA
GAAGTGCCTCACAGGCTGAGGGGTCACAGGATTATGGACGAAGAACCCTATTCCGAGAAGCCGAAGAAGT
CTTAAGACGCAGCTCCAGGACAGCACCAGGAAAAGTCCAGCGCCGAGGATGGCACCAGAAATCTGTGCAG
ATCAGAACTGAAGCTGGCTCTCGTCTCCACATTGAACCTCCTCTGGACTGTTCAGAAGATTTTGAATCAC
AAGAAGATGTGATTGGCAAGCATGAGGATGCCACTGGGGAGCACACACAGGAGCTGAGAAAAGGCCTGGG
GCTCAGCACAAGCCTCCAGACCCAAGAGGACGGCTCCAGCGACGAGTACGACTCTATTGAGGAAGACGTC
CTCTCTGAGACGGAGACTGAGGACCCTGTCCTGCCAGTCCACAACAGAGATGAATGTCCACTTCCCAGCC
ATGATGCAGTACAGAAGGATGTCCCCAAGGACCAGGAACTGGAAGGCCGGCATCCCCAGGCCACAGACAC
CCTTGTGGTAATGGAGTTTAACCCAGCTTCTAAAGGTAATAAGATGGACCGGATTTTATCTGCTAAGCGG
AAGGAGAATGCTGAGGTCTTCATCCCCAGCAAACCAGACTCTGTCCTGAATCCACAGCCCCCAGCTGTGT
TCCCAGAGCAGGAGAGAGCCTGTTCCAGATCTGGAAGCCGGAGAGATAGACCCTTGTCAGCAACCCGCAA
AGCATATGCAGCTGAGGACCGAGAGGAAGATGCCTCGGCTGTGCTGAAAGCCATCCAGGTGGAGAACGAA
GCTCTGCAACAGGTCTTCCTCAGCCACGATCCTGAGCTACATACCAGTCCACAGCAGGATACCAAGGAAC
CACCAGCAAAATCCTGGTCCAGTCTGCTGAAGGCCAAGGAGGACATCCCTGAGCTGCTTCCTGCTACTCC
AGTGACCACCGATCCTGAGCTGTGCAGAGCAGCAGCAGGAGCCAAAGCTGTCAGCCAAGCCATGGACGGA
ATGAGCCCTTTGGGAAGCAGACAACAGCATAAACTTGTGGGAGTCTTGCAGACTATGGAAAGTGACACTA
CCCATCTCAGCCAGGTGGCTATACCAACAGAGAAGCCAGTACCAAATTCAGAGGAAAAGTGGAAAGCAAG
AGTAGATGAGATCGAAGATGCCATCTATGTGACTATGGAAATCCTGTCTAACTGGGGCAATGCATCATGG
GTGGGTCTCACAGAAGTCCAGTTCTTTGATCTGAACAACATAAAGCTTTATGTCTCACCTCATGATGTGG
ACATCCGGAATGCAGTGTTGCCAGGCGAACTGGGGTGCCTTGTCAACAGGGACTTAGTGAGCAAGAAGGA
CCCCCCTGTGTGGACCTGCCCCTTCCACCCACCACTTCAGCTCTATTTCATTATTCACAACATGCGACAG
CTTCGTGACTTCGGTCTGACCATGATCAAGGTTCGGAATTACTGGACAGCAGATGGGGATCTTGACATTG
GTGCTAAGAACGTGAAACTCTATGTCAACAAAAGCCTCATCTTTGATGGCGTGTTAGAGAAAGGAGGAGG
TGAAGCCCCTTCTGATTGTACCATCCCCGTGGACCTTCAGAGAGAGAGGAATGAGAGCTCAGACAAGGCC
TTGAGCACTGGCTGGAAAGAAAGCAAAGGTGCCCTCAAGATGGCTGCCTTGAGTGATGCTAGGGAGCTTG
GGCTCAGCTGCTCACAGCCAGCGGAATCCTTGGATATGACAGTTTCCTCACAAGGAGATTTCCTTGGTGA
AAAGGTGAATTCTACATCTGGCCTGAAGAACAGTTTGTCCAAGTTACAGGAAGATGTAAGACTGTTGGCA
ACCCCTGCCTCTATGGGTGATGGGCCCAGTGTCCCTTCTTCATCCTCTCCTGGGAAATGTCTTCCTCTAG
AAGAGGAGCCCTCTTTGATCCAACAGCTGGAAAGTCTCAGAGGTAGGAAAATCCCCGAACCGACCGGGAA
AACCCCACACTGGTTACAGCCTTCTCTAGCAGGGATGGGCAAGAAACAGACAGTCAGGAAGCCCAAACCC
CTGTGGCTCAGTCCTGAAAAAGATCTGGAACAGAAGAGCAGGTTTCCATCTGAGGATGTCATGGGTGATA
CTCCTGGAGAGGTGGAGACCAGGGAAAAAGGCCCTCGTCGTGAGCAAGGGAGGACTAGCAGCTGGAATGT
CATCACTGAAGAGAGAGCCCCCAAAGCATTCTCCAAAGCCTGTGGCGATGACTTAGACATCTTTAGCCAG
CTTCCTAACAGGGATCGCCCTGCTAGTGGGAGGAGGGCCCTGAAGAAGGAAGCCAGCAGTAGCCATGGTG
ATGACCGGCCAGCCAGCAAAGAAGACACCCAGGCCTCCCAGACACTGCCTTGGTTGCAGTGGTATGGTGA
GCAGGAACACGCACTGCATGCATCATGGGACTCCCTCACTGCCTTCGACCGTGCCCACCGGGGCAGAATC
TCTGCCCTGGAACCACAGGGGGACATCCTAGATGAGTTCCTGAAGCAGCAAAGGAGCAGCCGGCATGAGG
AATTCCCAGCCCCTTGCAGAGAGGAGGAGCCAGAGCCCTCCACAGAGATGGGTGGTGACAGCGACTTTAA
AATCCCAGTCCTCCCTTATGGACAGCACTTGGTTATTGACATCAAGTCTACATGGGGAGACAGACACTAT
GTTGGCCTTAACGGCATAGAAATATTCAGCTCCTCAGGGGAACCAGTACAGATTTCCAGCATAACGGCAG
ACCCCCCTGACATCAATATTTTACCAGCTTATGGGAAAGACCCACGTGTAGTCTCCAACCTCATTGATGG
GGTGAACAGGACCCAGGATGACATGCATGTCTGGCTGGCCCCCTTCACACCAGGCATGACCCACACCATC
TCCATTGAGTTCACACACCCTTGCCAAGTTGCCCTGATTAGGATTTGGAATTACAATAAGTCTCGAATCC
ACTCCTTCCGAGGTGTGAAGGACATCACGATGCTGTTGGATACTCAGTGCATCTTTGAAGGAGAAATTGC
CAAAGCCTCAGGAACTCTGATGGGAGCCCCTGAGCACTTTGGAGACACTATTCTCTTCACCATGGATGAG
GACATCCTGGAGGCCATATTCTGTTTGGATGATACTTTTGACATGGATGCTGAGAGCCTGTGTGGCCTTC
AGCCTGAAGAAGCGCTAAGGAGGCCCAGCACTGCCGACGGTGAAGGTCAGGATGAAAGGCCTTTCACACA
GGCTGGCTTGGGTGCCCAGGACCAGGTACCAGGGCTAGAGCTACAAACCAGCCCCCCTGTCTCTGAAGTC
ACCACACCTGAGCCAGGCATCTTCTATGGGTTATGCCTCCGACTAAACTTGACAGCCTCCTGGGGGGACC
TGCACTACATAGGACTCACTGGCCTAGAAGTAGTAGGCAAGGACGGCGAGGCCTTGCCCATTCAACCACA
CCAGCTCTCTGCCTCTCCCAGGGACTTAAATGACCTGCCCGAGTACAACGATGACTCACGGACCCTGGAC
AAGTTAATCGATGGCATGAACATCACCACCGAGGATGAGCACATGTGGCTGATCCCCTTTTCCCCTGGGT
TGGACCATGTGGTTATGATCCACTTTGACAGAGCCCAAAGCATTGCTGGCCTGCGTCTCTGGAACTACAA
TAAATCTCCCGAGGACACCTACCGAGGGGTCAAAATCGCTCATGTGTCCCTGGATGGCCTGTGCGTGTCT
CCTGCAGAAGGCTTTCTCATCCGAAAGGGGCCTGGCAACTGTCACTTTGATTTTGCACAAGAAATCCTTT
TTGGGGACTACCTACAGACCCGGCTACCACCAGCACCCACCAGGAGACTAGATGCAAAGAGCCTGGAGCG
AGCCAGCATGGACTACGAGGCCCCACTCATGCCCTGTGGCTTCATTTTCCAGTTCCAGCTGCTGTCCAGC
TGGGGCGATCCCTACTACATCGGCCTCACAGGGCTGGAGCTGTATGACGAGCATGGGGAGAGGATCCCAT
TGTCCCAGAACAATATTGCTGCCTTCCCAGACAGTGTGAATGCGCTAGAGGGTGTTTGCGGGGATGTGAG
AACCCCTGACAAGCTTATCGACCAAGTCAACGACACCAGCGATGGCAGGCACATGTGGTTGGCCCCCATC
CTGCCTGGCCTGGTGAACCGAGTGTATGTCATTTTCGACCTGCCCACCACTGTGTCAATGATCAAACTGT
GGAATTACACGAAAACGCCTCAACGAGGAGTGAAGGAGTTTGGCCTGCTGGTGGATGACCTGCTTGTGTA
CAACGGCATCCTTGCCATGGTGAGCCACCTGGTTGGGGGCATCCTGCCCACGTGTGAGCCTACCGTGCCC
CACCACACCATCCTTTTTGCTGAGGACACTGACTTCTGTCACCAGGAGAAACACGCCATCATCAGTAAGC
CGGAGGAAGACCAGGACATACAAATGATGAATGAAAACCAGGTCATCACTACCTCGAGGAGGAAGCCAGG
CACTGCTGACCCAGCCTTACGCCCTAAAACCTGCATACGTGAGAAGGAGACCTCAAGGCGTTGGCGGTGC
TGA

Translation (1610 aa):
MDGQALRKVERSRSCSQERKEGYSKDMVTDFDEKHDEYLILLQQRNRILKHLKAKDPVQLRLEHLEQGFS
VYVNGANSELKTSPRKAVHTDFSRSASQAEGSQDYGRRTLFREAEEVLRRSSRTAPGKVQRRGWHQKSVQ
IRTEAGSRLHIEPPLDCSEDFESQEDVIGKHEDATGEHTQELRKGLGLSTSLQTQEDGSSDEYDSIEEDV
LSETETEDPVLPVHNRDECPLPSHDAVQKDVPKDQELEGRHPQATDTLVVMEFNPASKGNKMDRILSAKR
KENAEVFIPSKPDSVLNPQPPAVFPEQERACSRSGSRRDRPLSATRKAYAAEDREEDASAVLKAIQVENE
ALQQVFLSHDPELHTSPQQDTKEPPAKSWSSLLKAKEDIPELLPATPVTTDPELCRAAAGAKAVSQAMDG
MSPLGSRQQHKLVGVLQTMESDTTHLSQVAIPTEKPVPNSEEKWKARVDEIEDAIYVTMEILSNWGNASW
VGLTEVQFFDLNNIKLYVSPHDVDIRNAVLPGELGCLVNRDLVSKKDPPVWTCPFHPPLQLYFIIHNMRQ
LRDFGLTMIKVRNYWTADGDLDIGAKNVKLYVNKSLIFDGVLEKGGGEAPSDCTIPVDLQRERNESSDKA
LSTGWKESKGALKMAALSDARELGLSCSQPAESLDMTVSSQGDFLGEKVNSTSGLKNSLSKLQEDVRLLA
TPASMGDGPSVPSSSSPGKCLPLEEEPSLIQQLESLRGRKIPEPTGKTPHWLQPSLAGMGKKQTVRKPKP
LWLSPEKDLEQKSRFPSEDVMGDTPGEVETREKGPRREQGRTSSWNVITEERAPKAFSKACGDDLDIFSQ
LPNRDRPASGRRALKKEASSSHGDDRPASKEDTQASQTLPWLQWYGEQEHALHASWDSLTAFDRAHRGRI
SALEPQGDILDEFLKQQRSSRHEEFPAPCREEEPEPSTEMGGDSDFKIPVLPYGQHLVIDIKSTWGDRHY
VGLNGIEIFSSSGEPVQISSITADPPDINILPAYGKDPRVVSNLIDGVNRTQDDMHVWLAPFTPGMTHTI
SIEFTHPCQVALIRIWNYNKSRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLMGAPEHFGDTILFTMDE
DILEAIFCLDDTFDMDAESLCGLQPEEALRRPSTADGEGQDERPFTQAGLGAQDQVPGLELQTSPPVSEV
TTPEPGIFYGLCLRLNLTASWGDLHYIGLTGLEVVGKDGEALPIQPHQLSASPRDLNDLPEYNDDSRTLD
KLIDGMNITTEDEHMWLIPFSPGLDHVVMIHFDRAQSIAGLRLWNYNKSPEDTYRGVKIAHVSLDGLCVS
PAEGFLIRKGPGNCHFDFAQEILFGDYLQTRLPPAPTRRLDAKSLERASMDYEAPLMPCGFIFQFQLLSS
WGDPYYIGLTGLELYDEHGERIPLSQNNIAAFPDSVNALEGVCGDVRTPDKLIDQVNDTSDGRHMWLAPI
LPGLVNRVYVIFDLPTTVSMIKLWNYTKTPQRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVP
HHTILFAEDTDFCHQEKHAIISKPEEDQDIQMMNENQVITTSRRKPGTADPALRPKTCIREKETSRRWRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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