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Report for CCDS40245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40245.1 Public Mus musculus 8 Xkr5 23 108 98 CCDS HistoryNCBI Gene:319581Re-query CCDS DB by CCDS ID:40245.1Re-query CCDS DB by GeneID:319581See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055503.11 ENSMUSP00000061748.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055503.11Link to Ensembl Protein Viewer:ENSMUSP00000061748.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055503Re-query CCDS DB by Protein ID:ENSMUSP00000061748
Original member Current member NCBI NM_176951.5 NP_795925.1 Accepted alive Link to Nucleotide Sequence:NM_176951.5Link to Protein Sequence:NP_795925.1Re-query CCDS DB by Nucleotide ID:NM_176951Re-query CCDS DB by Protein ID:NP_795925Link to BLAST:NP_795925.1

Chromosomal Locations for CCDS 40245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18933494 18934605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18937227 18937338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18939068 18939237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18940613 18940751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGAAGCCAGGCCACCATACCATGCTATGGGCTGCTCTCTTGTGCCAGCAGCTCTGGAGGATGGGCATGC
TGGGTGCTCGTGTGCTAAGCCTGGTTCTGTTCTGCCGAGTTTACCGTGTGTGGGTTTTGGTGGTTGGAGG
TGCTCACTGGCTAGTGATGACCTTCTGGCTCGTGGCCCAGCAGAGCGACATTGTAGAGAGCACCTGCCAC
TGGAGGCTGTTCAATCTGCTGGTGGGGGCCGTGTTCATCCTCTGCTACATCAATTTCTGGGACAGCCCTT
CCAGAAGCAGGGTGGCCAGCTTCTACTTGGTTATGCTGCTGGAGAACTCCATACTCTTACTACTGGCCAC
TGACTTTCTGCAGGGAGTACCAGGGACCAGCCTGTGGACTGTGGTGGGAGTCTTGTCTGGATTTCTGATT
GGGTGTGCATCGCTGGTTATTTATTACAGCTTACTACACCCTAAGTCCTCAGACATCCAGCAGAGCTTCA
TGAGGAAATGCTGTGGCCCCATCGAGGATAACAAACCTGAATCAGAACCTCCTCCCAGGGCCGTGGATCC
CACAGGGGAGATGCCAGACAGCTCAAGCTGGTGCCAAGAGGAAAGCTATGAGCTAACAAGTCTAGATAAG
GCCCCCAGCCCAGAGCAGAACACTGCAGAGGTGGGGCTCGGGGAGCAGAGATCTGGGGAGTCCTCTTTCT
TCAGCCACCACCACTGGCTGTTGCTGAAACTCGCTCTCAAGACAGGAAGTGTATCTAGGATCAACGCAGC
CCTCGGAGGTGACAGCCCTGGCTGCTCCTGTCCCCCTCTGCTGGGGTCGAGTCAACACTGTGATCTGCAG
AGGAAACCCCTGTTTTCCCATCAAGACCTCCCATCCTCTCCCTGTGACCCTTTGACCTTGGAGAAAGGGT
CTGAGTACGTAGGGGCTCCGAAAGCAGAGATGGAGTCATTGGAAACTTCAAGCTATCTCTCCTTTGCCAG
CGAGCTTGAGGACAATGCAACAACCCAGAAGCCACCAGCTACCCAGGAGGACAGTCCAAAGCTGGCTGGG
TCCAAGGCTGACCTTGCAGCTCAGGGGAAGGAGACAGAAGGTCCCCTGCAGGGGAAGGAAGGACAGGAGA
GCACAACACTGTATTTCAGTGCCGCCATGGACAGAACCACATCCCACCAAAGAGGCAGCCCAGTAGTTCT
GCGGATATCCCACTCGGAGACTCTGGTAGAGAGCAGACCTGGGCAGCCTGCGCTGCCTCAGGCAGTCACT
AAGCCCTTTCCTGTTACCGTGGCCAATATTAGTCCCATTCCAGGTAGAAACTTCCGCCCCAGTGCAGAGC
TTCCTGGAAGAGCCCCAGATAGTTCAGAGTGTGAGGAGTGGAAGGACGCGGCAAGGGACCCGAGTATGCA
GAGCTCATTGCCGAAGATGAGGCTGAAGGCAGCTGAAGAGCCCTGCTTCACATCTACCCCTAAGTCGGAG
TCCATCCAAAGGGACTACAGCTGCAGGGACAGGGTGAGACAGGAGATGAGCTTTTTCATCTGA

Translation (510 aa):
MKPGHHTMLWAALLCQQLWRMGMLGARVLSLVLFCRVYRVWVLVVGGAHWLVMTFWLVAQQSDIVESTCH
WRLFNLLVGAVFILCYINFWDSPSRSRVASFYLVMLLENSILLLLATDFLQGVPGTSLWTVVGVLSGFLI
GCASLVIYYSLLHPKSSDIQQSFMRKCCGPIEDNKPESEPPPRAVDPTGEMPDSSSWCQEESYELTSLDK
APSPEQNTAEVGLGEQRSGESSFFSHHHWLLLKLALKTGSVSRINAALGGDSPGCSCPPLLGSSQHCDLQ
RKPLFSHQDLPSSPCDPLTLEKGSEYVGAPKAEMESLETSSYLSFASELEDNATTQKPPATQEDSPKLAG
SKADLAAQGKETEGPLQGKEGQESTTLYFSAAMDRTTSHQRGSPVVLRISHSETLVESRPGQPALPQAVT
KPFPVTVANISPIPGRNFRPSAELPGRAPDSSECEEWKDAARDPSMQSSLPKMRLKAAEEPCFTSTPKSE
SIQRDYSCRDRVRQEMSFFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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