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Report for CCDS40327.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
40327.1 |
Public |
Mus musculus |
8 |
Slc7a2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:11988](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:40327.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:11988](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 40327.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000098816.9 |
ENSMUSP00000096414.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000098816.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000096414.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000098816](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000096414](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000117077.7 |
ENSMUSP00000113729.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000117077.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000113729.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000117077](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000113729](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001044740.2 |
NP_001038205.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001044740.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001038205.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001044740](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001038205](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001038205.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001038205.1 |
658 |
P18581-2 |
658 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 40327.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1977 nt): ATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAAATTGTCACACTGGACA GCCTTGAAGATTCCAAACTCTGCCGCTGCTTAACCACCGTGGACCTCATCGCTTTGGGGGTTGGAAGCAC TCTGGGCGCTGGGGTCTACGTCCTGGCTGGGGAAGTCGCCAAAGCCGATTCTGGCCCGAGTATCGTGGTG TCTTTCCTCATCGCTGCCCTGGCCTCGGTTATGGCCGGCCTTTGCTATGCTGAATTTGGGGCCCGAGTAC CCAAGACTGGATCTGCGTATCTATACACTTACGTCACGGTCGGAGAGCTGTGGGCCTTCATCACTGGCTG GAATCTCATCCTGTCATATGTCATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCACCTTCGACGAA CTTCTTAATAAACAGATTGGCCAGTTTTTCAAAACGTACTTCAAAATGAATTACACTGGTCTGGCAGAGT ATCCAGACTTCTTTGCCGTGTGCCTTGTATTACTCCTGGCAGGTCTTTTATCTTTTGGAGTAAAAGAGTC TGCTTGGGTGAATAAATTTTTTACAGCTATTAATATCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTT GTGAAAGGAAATGTGGCTAACTGGAAGATCAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAG AACCACCTTCTGAGAACGGAACAAGCATCTACGGGGCTGGCGGCTTTATGCCCTATGGCTTTACAGGGAC GTTGGCTGGTGCTGCAACGTGCTTTTATGCCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG GTTCGGAATCCGCAAAAGGCGATCCCCATCGGAATAGTGACGTCCTTACTTGTCTGCTTTATGGCTTACT TTGGGGTTTCTGCAGCTTTAACGCTTATGATGCCTTACTACCTCCTGGATGAGAAAAGTCCACTCCCGGT CGCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCTCCCTCTGCGCCTTATCA ACAAGTCTTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTT TCAAATGTCTAGCTCAAATCAATTCCAAAACGAAGACACCAGTAATTGCTACTTTGTCGTCGGGTGCAGT GGCAGCTGTGATGGCCTTTCTTTTTGACCTGAAGGCCCTCGTGGACATGATGTCTATTGGCACCCTCATG GCCTACTCTCTGGTGGCAGCCTGTGTGCTTATTCTCAGGTACCAACCTGGCTTGTGTTATGACCAGCCCA AATACACCCCTGAGAAAGAAACTCTGGAATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCAC CATGCTGCAAGGACAGGGTTTCAGCCTACGAACCCTCTTCAGCCCCTCTGCCCTGCCCACACGACAGTCG GCTTCCCTTGTGAGCTTTCTGGTGGGATTCCTGGCTTTCCTCATCCTGGGCTTGAGTATTCTAACCACGT ATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGAGCCTGGCTCTTCTCGCCCTGTTCCTTGTCCTCTG CGTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATGGTCCCGTTC TTACCGTTTCTGCCGGCCTTCAGCATCCTGGTCAACATTTACTTGATGGTCCAGTTAAGTGCGGACACTT GGATCAGATTCAGCATCTGGATGGCGCTTGGCTTTCTGATCTACTTCGCCTATGGCATTAGACACAGCTT GGAGGGTAACCCCAGGGATGAAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAA GAAAAGTCCGCCATGCAAGCAAATGACCATCACCAAAGAAACCTCAGCTTACCTTTCATACTTCATGAAA AGACAAGTGAATGTTGA
Translation (658 aa): MIPCRAVLTFARCLIRRKIVTLDSLEDSKLCRCLTTVDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVV SFLIAALASVMAGLCYAEFGARVPKTGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDE LLNKQIGQFFKTYFKMNYTGLAEYPDFFAVCLVLLLAGLLSFGVKESAWVNKFFTAINILVLLFVMVAGF VKGNVANWKISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEE VRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVAFEYVRWSPAKYVVSAGSLCALS TSLLGSIFPMPRVIYAMAEDGLLFKCLAQINSKTKTPVIATLSSGAVAAVMAFLFDLKALVDMMSIGTLM AYSLVAACVLILRYQPGLCYDQPKYTPEKETLESCTNATLKSESQVTMLQGQGFSLRTLFSPSALPTRQS ASLVSFLVGFLAFLILGLSILTTYGVQAIARLEAWSLALLALFLVLCVAVILTIWRQPQNQQKVAFMVPF LPFLPAFSILVNIYLMVQLSADTWIRFSIWMALGFLIYFAYGIRHSLEGNPRDEEDDEDAFSDNINAATE EKSAMQANDHHQRNLSLPFILHEKTSEC
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