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Report for CCDS40445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40445.1 Public Mus musculus 8 Cfap20 23 108 98 CCDS HistoryNCBI Gene:14894Re-query CCDS DB by CCDS ID:40445.1Re-query CCDS DB by GeneID:14894See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034249.7 ENSMUSP00000034249.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034249.7Link to Ensembl Protein Viewer:ENSMUSP00000034249.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034249Re-query CCDS DB by Protein ID:ENSMUSP00000034249
Original member Current member NCBI NM_008187.2 NP_032213.2 Accepted alive Link to Nucleotide Sequence:NM_008187.2Link to Protein Sequence:NP_032213.2Re-query CCDS DB by Nucleotide ID:NM_008187Re-query CCDS DB by Protein ID:NP_032213Link to BLAST:NP_032213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032213.2 193 Q8BTU1-1 193 100% 0 0

Chromosomal Locations for CCDS 40445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95420664 95420669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95421136 95421246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95422058 95422246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95422783 95422894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95424617 95424696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95434488 95434571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGTTCAAGAACACGTTCCAGAGTGGCTTCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCCTGCAGA
TCTGGGACAAAAAGGTACGGAATGGCCACATCAAAAGAATCACTGACAATGACATCCAGTCCCTGGTGCT
AGAGATTGAAGGGACAAATGTCAGTACCACATACATCACGTGTCCTGCGGACCCCAAGAAGACACTGGGG
ATCAAACTGCCTTTCCTTGTCATGATCATCAAAAACTTGAAGAAATATTTTACCTTTGAAGTCCAGGTAC
TAGATGACAAAAACGTTCGTCGAAGGTTTCGAGCAAGTAACTACCAGAGTACCACTCGAGTCAAGCCCTT
CATCTGTACCATGCCCATGCGGCTGGATGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGATTTCACC
CGGCGGGCATATGGCACGAACTACATCGAGACCCTGAGAGTGCAGATCCATGCAAACTGCCGTATCCGAA
GGGTTTACTTCTCAGACAGACTCTACTCAGAAGATGAGCTGCCAGCAGAGTTCAAACTCTATCTACCAGT
TCAGAACAAGGCCAAACAATAA

Translation (193 aa):
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLG
IKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFT
RRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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