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Report for CCDS40450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40450.1 Public Mus musculus 8 Cklf 23 108 98 CCDS HistoryNCBI Gene:75458Re-query CCDS DB by CCDS ID:40450.1Re-query CCDS DB by GeneID:75458See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034342.12 ENSMUSP00000034342.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034342.12Link to Ensembl Protein Viewer:ENSMUSP00000034342.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034342Re-query CCDS DB by Protein ID:ENSMUSP00000034342
Original member Current member NCBI NM_029295.3 NP_083571.1 Accepted alive Link to Nucleotide Sequence:NM_029295.3Link to Protein Sequence:NP_083571.1Re-query CCDS DB by Nucleotide ID:NM_029295Re-query CCDS DB by Protein ID:NP_083571Link to BLAST:NP_083571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083571.1 152 Q9DAS1-1 152 100% 0 0

Chromosomal Locations for CCDS 40450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104251018 104251095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104257285 104257443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104261474 104261569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104263271 104263396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGAGACTCCACGGCCGGTCGTAAGCCGTCGGCCCTTCTGCTGTACTCTGAAATGCTTTGTGAAGTTCC
TG
CGGTTGGTGGTAACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGT
C
ATCACTGGGTTTGAAGTCACCGTTATTTTCTGTTTCCTAGTCTTATACACGTGTGGACTTGACAAGATA
ATG
AGATCTTTCTTTTGGCCTTTGCTTGATGTTATTAACTCAATGGTAACAGCATTATGCATGCTCATTG
TG
TCTGTGTTGGCTCTAATACCAGAAACCTCAACAAAGACAATCCTTGGAGGGGTGTTTGGTTTCCTGAC
A
GTAACATGTACTATTGCCGACTGTGCCCTTATGTGCCAGAAACTTCGGTTTCGTCCACGTCAACCTTAT
CAG
AAAAAGTCTACTAATGACATCGATGACAGAGAATAA


Translation (152 aa):
METPRPVVSRRPFCCTLKCFVKFLRLVVTVTSMIFFIVGQAPEPYIVITGFEVTVIFCFLVLYTCGLDKI
M
RSFFWPLL
DVINSMVTALCMLIVSVLALIPETSTKTILGGVFGFLTVTCTIADCALMCQKLRFRPRQPY
Q
KKSTNDIDDRE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser