NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40469.1 Public Mus musculus 8 Txnl4b 23 108 98 CCDS HistoryNCBI Gene:234723Re-query CCDS DB by CCDS ID:40469.1Re-query CCDS DB by GeneID:234723See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034159.7 ENSMUSP00000034159.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034159.7Link to Ensembl Protein Viewer:ENSMUSP00000034159.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000034159Re-query CCDS DB by Protein ID:ENSMUSP00000034159
Original member Current member EBI ENSMUST00000178445.1 ENSMUSP00000137524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178445.1Link to Ensembl Protein Viewer:ENSMUSP00000137524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178445Re-query CCDS DB by Protein ID:ENSMUSP00000137524
Original member Current member NCBI NM_175646.4 NP_783577.2 Accepted alive Link to Nucleotide Sequence:NM_175646.4Link to Protein Sequence:NP_783577.2Re-query CCDS DB by Nucleotide ID:NM_175646Re-query CCDS DB by Protein ID:NP_783577Link to BLAST:NP_783577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783577.2 149 Q8BUH1 149 100% 0 0

Chromosomal Locations for CCDS 40469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109568966 109569097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109571371 109571522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109572694 109572859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGAGCTTCCTCTTGCCCAAACTGACCAGCAAGAAAGAAGTAGACCAGGCGATCAAAAGCACTGCGGAGA
AGGTGTTGGTTCTCAGGTTTGGGAGGGACGAGGACCCCGTCTGTCTGCAGCTGGATGATATTCTCTCAAA
AACTTCAGCCGACCTGAGTAAAATGGCTGCTATTTACCTGGTGGACGTGGACCACACGCCGGTTTACACA
CAGTATTTTGACATCAGTTACATTCCCTCTACCGTATTTTTCTTCAATGGGCAGCACATGAAGGTGGATT
ATGGGTCTCCGGATCACACTAAATTCGTAGGAAGCTTCAAAACCAAACAAGACTTCATAGATTTGATTGA
AGTCATCTACCGGGGAGCGATGAGGGGAAAACTTATTGTCCAGAGTCCTATTGATCCCAAGAACGTGCCC
AAATATGACCTCCTCTATCAAGACATTTAA

Translation (149 aa):
MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYLVDVDHTPVYT
QYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNVP
KYDLLYQDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH