NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40482.1 Public Mus musculus 8 Cntnap4 23 108 98 CCDS HistoryNCBI Gene:170571Re-query CCDS DB by CCDS ID:40482.1Re-query CCDS DB by GeneID:170571See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034225.6 ENSMUSP00000034225.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034225.6Link to Ensembl Protein Viewer:ENSMUSP00000034225.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034225Re-query CCDS DB by Protein ID:ENSMUSP00000034225
Original member Current member NCBI NM_130457.2 NP_569724.2 Accepted alive Link to Nucleotide Sequence:NM_130457.2Link to Protein Sequence:NP_569724.2Re-query CCDS DB by Nucleotide ID:NM_130457Re-query CCDS DB by Protein ID:NP_569724Link to BLAST:NP_569724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569724.2 1310 Q99P47 1310 100% 0 0

Chromosomal Locations for CCDS 40482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 112570135 112570225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112616398 112616508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112665107 112665300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112733413 112733560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112752188 112752391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112752933 112753117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112753856 112753999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112757394 112757655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112767460 112767609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112773567 112773738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112781523 112781629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112785776 112785895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112803050 112803247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112810585 112810741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112815480 112815607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112841705 112841875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112842518 112842736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112853991 112854230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112856293 112856517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112858159 112858292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112859107 112859194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112875414 112875632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112875956 112876027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 112881689 112881882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3933 nt):
ATGAATATGGGATCTGTCGCTGGAGCTGTTCTCAAGATGTTACTTCTGTTGTCTACTCAAAATTGGAACA
GAGTGGAAGCTGGGAATTCATATGACTGTGATGAGCCCCTGGTGTCTGCCTTGCCTCAGGCATCCTTCAG
CAGTTCTTCTGAGCTATCCAGCAGTCACGGTCCTGGATTCGCAAGGCTGAATCGAAGAGACGGAGCTGGT
GGCTGGTCCCCACTTGTGTCCAACAAATACCAGTGGCTGCAGATTGACCTTGGAGAGAGGATGGAAGTCA
CGTCCGTGGCCACCCAAGGTGGATATGGGAGCTCCAACTGGGTGACCAGCTATCTCCTGATGTTCAGTGA
TAGTGGAAGGAACTGGAAGCAGTATAGACAAGAAGACAGCATCTGGGGATTTTCTGGGAACGCGAACGCA
GACAGCGTTGTGTACTATAGACTCCAGCCTTCAATCAAAGCCAGGTTCCTACGCTTCATTCCTCTAGAAT
GGAACCCCAAGGGCAGAATCGGGATGCGCATTGAGGTGTTCGGGTGTGCATACCGGTCGGTTGTAATTGA
TCTTGATGGAAAAAGTTCCCTCCTCTACAGATTTGATCAAAACTCCTTGAGTCCAATAAGAGATATCATA
TCTTTGAAATTTAAAACCATGGAGAGCGATGGGATCCTACTGCACAGGGCAGGGCCTGCTGGAGATCATA
TCACATTGGAGTTAAGAAGAGGAAAGCTCTTCTTACTTATTAATTCAGGTGATGCTAGACTGACCTCCAG
TTCGACCCTGATCAACCTCACACTGGGCAGCCTGCTGGATGATCAGCACTGGCATTCTGTGCTCATCCAG
AGACTGGGGAAACAGGTCAACTTTACAGTGGACGAGCACAGGCGTCACTTCCATGCCCAAGGAGAATTCA
ATTACCTGGATCTTGATTATGAGATCAGCTTTGGAGGGATCTCAGCACCTGCAAAATCAGTGTCCTTGCC
ATACAAACATTTCCATGGATGTTTAGAGAACCTCTTTTATAATGGCGTAGATGTCATTGGCTTGGTCAAG
GAACACAGCCCTCAGATCATCACCATGGGAAATGCCTCCTTTTCTTGTTCACAACCACAGTCTATGCCTC
TGACTTTTCTGAGCCCCAGGAGTTATTTGGTCCTCCCAGCGTCTACTAAAGAGGAAGCCATTTCAGCCAG
CTTTCAATTCCGAACCTGGAATAAGGCGGGACTTCTGCTCTTCAGTGAACTCCAGCTGGTGTCAGGCAGT
CTCCTCCTCTTGCTCAGCGATGGAAAACTTAAACTGACTCTTTACCAGCCAGGAAAGTCACCCAGTGACA
TCACAGCAGGTGCAGGCTTAGGTGACGGCCAGTGGCATTCTGTCTCCTTGTCTGCTAAAAGGAATCACCT
GAGTGTGGTGGTGGACGGCCACATCAGCCCTGCTTCTCCTTGGCTGGGGCCCGAGCAGGTTAATTCAGGA
GGTGTCTTTTATTTTGGAGGTTGTCCAGACAAAGGCTTTGGATCCAAGTGTAAGAGCCCTCTAGGTGGAT
TTCAAGGATGCATGAGGCTCATCTCCATCAACAACAAAATGGTAGATCTGATTGCAGTCCAGCAGGGGGC
CCTTGGCAACTTCAGTGACCTTCAGATAGACTCATGTGGCATCTCAGACAGGTGTTTGCCCAACTCTTGT
GAGCATGGTGGTGAATGTTCTCAGTCTTGGAGCACCTTTCATTGTAACTGCACAAACACGGGGTACACAG
GAGCCACTTGTCACAGCTCTGTCTATGAGCAGTCATGTGAAGCCTATAAGCACCAAGGAAATGCTTCTGG
ATTCTACTACATAGACTCAGATGGGAGTGGTCCTTTGCAGCCATTCCTCTTATACTGCAATATGACTGAA
ACGGCATGGACCGTCATGCAGCACAACGGCTCCGACTTGATGAGAGTCAGGAACACTCACTCTGAGAATG
CGCACACTGGGGTGTTTGAGTACACGGCCAGCATGGAACAGCTCCAGGCCGCCATTAACCGGGCGGAGCA
CTGCCAACAGGAGCTGGTGTATTACTGCAAGAAGTCGCGCCTCGTTAATCAGCAAGATGGAAGCCCTCGG
AGCTGGTGGGTGGGAAGAACCAATGAGACACAGACATATTGGGGTGGTTCCTTGCCTGTGCATCAAAAGT
GCACTTGTGGCTTGGAAGGGAACTGCATTGATGCCCAGTATCATTGCAACTGTGATGCAGATCTGAACGA
ATGGACCAATGACACTGGATTCCTCTCCTATAAAGAACATCTGCCTGTCACTAAGATTGTGATTACGGAC
ACAGGACGGCCCCATTCAGAAGCTGCTTATAAACTGGGGCCTCTGCTCTGCCGGGGAGACAGGCCGTTTT
GGAACGCAGCTTCCTTTAATACCGAGGCTTCCTACCTCCACTTTCCCACATTCCATGGCGAGCTCAGTGC
AGATGTGTCCTTCTTTTTCAAGACGACAGCCCTCTCTGGGGTGTTTTTAGAAAACCTGGGAATCACTGAC
TTCATACGAATAGAATTACGCTCACCCACAACAGTCACCTTTTCATTTGACGTGGGGAATGGGCCTTTTG
AACTCTCTGTGCATTCACCCACTCACTTCAACGACAACCAGTGGCATCATGTGCGAGTGGAAAGGAACAT
GAAAGAGGCATCCCTTCGGGTGGACGAGCTCCCTCCAAAGATACAAGCGGCTCCCACGGATGGCCATGTC
CTGTTACAGCTCAATAGTCAACTCTTTGTTGGTGGGACCGCCACCAGGCAGAGAGGCTTCCTAGGGTGCA
TCAGGTCCCTGCAGTTGAATGGGATGGCCCTGGATCTGGAAGAAAGAGCCACAGTAACCCCTGGGGTGCA
GCCAGGTTGCAGAGGACACTGTGGGAGCTATGGAAAGTTATGTCGCCATGGAGGGAAGTGCAGGGAAAAG
CCCAGCGGCTTCTTCTGTGATTGCTCTTCCTCTGCCTATGCAGGACCATTCTGCTCCAAAGAGATTTCCG
CATATTTTGGATCTGGGTCTTCTGTGATTTACAATTTTCAAGAAAATTATTCTCTAAGCAAGAACTCCAG
CTTTCACGCTGCTTCATTTCATGGGGATATGAAGCTGAGCAGAGAGATGATCAAATTTAGCTTCCGAACC
ACACGGGCACCAAGCTTGCTGCTTCATATGAGTTCCTTTTATAAAGAATACCTCTCAATTATCATTGCCA
AAAACGGAAGTTTGCAGATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCAGCTTTGACTT
GAAGAGCATGGCAGATGGGCAGCTTCACCACATAAAGATCAACAGAGAAGAGGGAATGGTCTTCGTGGAG
ATTGATGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTCAGTGCAGTCAAATCTTTGG
TACTGGGCAGAATGCTAGAGTACAGTGATGTAGACCAGGAGACTGCATTGGCTGCAGCCCATGGCTTCAC
AGGCTGCCTCTCTGCAGTGCAGTTCAGCCATATTGCACCTCTGAAGGCTGCTCTGCAACCCGGTCCCCCA
GCCCCTGTCACCGTGACAGGGCACGTGACTGAGTCGAGCTGTGTGGCCCCTTCTGGCACCGATGCCACAT
CCAGAGAAAGGACGCATTCATTTGCAGATCACTCTGGAACGATGGACGACAGAGAGCCTCTCACTCATGC
AATCAAAAGCGACTCTGCAGTGATTGGAGGTCTGATAGCTGTTGTGATCTTTATCTTGCTTTGTGTCTCT
GCCATAGCTGTTCGCATTTATCAGCAGAAAAGGTTATACAAAAGAAATGAGGCAAAAAGGTCAGAGAATG
TGGACAGCGCTGAGGCGGTTTTGAAAAGCGAGCTTCATATTCAGAATGCAGTCGGTGAAAATCAGAAAGA
GTATTTCTTCTGA

Translation (1310 aa):
MNMGSVAGAVLKMLLLLSTQNWNRVEAGNSYDCDEPLVSALPQASFSSSSELSSSHGPGFARLNRRDGAG
GWSPLVSNKYQWLQIDLGERMEVTSVATQGGYGSSNWVTSYLLMFSDSGRNWKQYRQEDSIWGFSGNANA
DSVVYYRLQPSIKARFLRFIPLEWNPKGRIGMRIEVFGCAYRSVVIDLDGKSSLLYRFDQNSLSPIRDII
SLKFKTMESDGILLHRAGPAGDHITLELRRGKLFLLINSGDARLTSSSTLINLTLGSLLDDQHWHSVLIQ
RLGKQVNFTVDEHRRHFHAQGEFNYLDLDYEISFGGISAPAKSVSLPYKHFHGCLENLFYNGVDVIGLVK
EHSPQIITMGNASFSCSQPQSMPLTFLSPRSYLVLPASTKEEAISASFQFRTWNKAGLLLFSELQLVSGS
LLLLLSDGKLKLTLYQPGKSPSDITAGAGLGDGQWHSVSLSAKRNHLSVVVDGHISPASPWLGPEQVNSG
GVFYFGGCPDKGFGSKCKSPLGGFQGCMRLISINNKMVDLIAVQQGALGNFSDLQIDSCGISDRCLPNSC
EHGGECSQSWSTFHCNCTNTGYTGATCHSSVYEQSCEAYKHQGNASGFYYIDSDGSGPLQPFLLYCNMTE
TAWTVMQHNGSDLMRVRNTHSENAHTGVFEYTASMEQLQAAINRAEHCQQELVYYCKKSRLVNQQDGSPR
SWWVGRTNETQTYWGGSLPVHQKCTCGLEGNCIDAQYHCNCDADLNEWTNDTGFLSYKEHLPVTKIVITD
TGRPHSEAAYKLGPLLCRGDRPFWNAASFNTEASYLHFPTFHGELSADVSFFFKTTALSGVFLENLGITD
FIRIELRSPTTVTFSFDVGNGPFELSVHSPTHFNDNQWHHVRVERNMKEASLRVDELPPKIQAAPTDGHV
LLQLNSQLFVGGTATRQRGFLGCIRSLQLNGMALDLEERATVTPGVQPGCRGHCGSYGKLCRHGGKCREK
PSGFFCDCSSSAYAGPFCSKEISAYFGSGSSVIYNFQENYSLSKNSSFHAASFHGDMKLSREMIKFSFRT
TRAPSLLLHMSSFYKEYLSIIIAKNGSLQIRYKLNKYHEPDVISFDLKSMADGQLHHIKINREEGMVFVE
IDENTRRQTYLSSGTEFSAVKSLVLGRMLEYSDVDQETALAAAHGFTGCLSAVQFSHIAPLKAALQPGPP
APVTVTGHVTESSCVAPSGTDATSRERTHSFADHSGTMDDREPLTHAIKSDSAVIGGLIAVVIFILLCVS
AIAVRIYQQKRLYKRNEAKRSENVDSAEAVLKSELHIQNAVGENQKEYFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH