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Report for CCDS40509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40509.1 Public Mus musculus 8 Chmp1a 23 108 98 CCDS HistoryNCBI Gene:234852Re-query CCDS DB by CCDS ID:40509.1Re-query CCDS DB by GeneID:234852See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000759.8 ENSMUSP00000000759.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000759.8Link to Ensembl Protein Viewer:ENSMUSP00000000759.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000759Re-query CCDS DB by Protein ID:ENSMUSP00000000759
Original member Current member NCBI NM_145606.3 NP_663581.1 Accepted alive Link to Nucleotide Sequence:NM_145606.3Link to Protein Sequence:NP_663581.1Re-query CCDS DB by Nucleotide ID:NM_145606Re-query CCDS DB by Protein ID:NP_663581Link to BLAST:NP_663581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663581.1 196 Q921W0 196 100% 0 0

Chromosomal Locations for CCDS 40509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123205725 123205746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123206144 123206331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123207473 123207601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123207964 123208110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123209021 123209098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123210216 123210235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123212666 123212672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGACGATACCCTGTTCCAGTTGAAGTTCACAGCGAAGCAGCTGGAGAAACTGGCCAAGAAGGCCGAGA
AGGACTCCAAGGCTGAGCAGGCCAAAGTGAAGAAGGCCCTTCAGCAGAAAAATGTGGAGTGTGCCCGGGT
GTATGCTGAAAATGCCATCCGCAAGAAGAATGAAGGTGTAAATTGGCTCCGAATGGCCTCCCGTGTGGAC
GCAGTGGCCTCCAAGGTGCAGACAGCTGTGACCATGAAGGGGGTGACCAAGAATATGGCCCAGGTGACCA
AGGCTCTGGACAAGGCCCTGAGCGCCATGGACCTTCAGAAGGTGTCTGCAGTGATGGACAGGTTTGAGCA
GCAGGTGCAGAACCTGGATGTGCACACATCGGTAATGGAGGATTCCGTGAGCTCTGCCACCACGCTGACC
ACGCCTCAGGAGCAGGTCGACAGCCTCATTGTCCAGATAGCTGAGGAAAACGGCCTGGAGGTCCTAGACC
AGCTCAGCCAGCTGCCAGAGGGAGCGTCTGCTGTGGGCGAGAGCTCTGTGCGCAGCCAGGAGGACCAGCT
GTCCCGGAGGTTGGCTGCCCTGAGGAATTAG

Translation (196 aa):
MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVD
AVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLT
TPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALRN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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