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Report for CCDS40553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40553.1 Public Mus musculus 9 Ilf3 23 108 98 CCDS HistoryNCBI Gene:16201Re-query CCDS DB by CCDS ID:40553.1Re-query CCDS DB by GeneID:16201See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115414.2 ENSMUSP00000111074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115414.2Link to Ensembl Protein Viewer:ENSMUSP00000111074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115414Re-query CCDS DB by Protein ID:ENSMUSP00000111074
Original member Current member NCBI NM_001042709.2 NP_001036174.1 Accepted alive Link to Nucleotide Sequence:NM_001042709.2Link to Protein Sequence:NP_001036174.1Re-query CCDS DB by Nucleotide ID:NM_001042709Re-query CCDS DB by Protein ID:NP_001036174Link to BLAST:NP_001036174.1

Chromosomal Locations for CCDS 40553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21387795 21387797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21388524 21388753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21389306 21389483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21392295 21392442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21393711 21393802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21394195 21394290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21394831 21394942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21395371 21395468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21396020 21396131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21396217 21396327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21397469 21397668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21397969 21398136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21399125 21399250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21399416 21399592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21399685 21399841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21399960 21400013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21400452 21400501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGCGTCCCATGAGAATTTTTGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAA
CACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGA
CTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGAC
GATGAGAGCAAAGAAGGGGCTGGGGAACAGAAGGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGC
GGGTCGGCCTGGTAGCCAAGGGTCTTCTGCTCAAGGGGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAA
GGAGAAGCCCACAACCGCCCTTCTGGACAAGGTGGCTGACAACCTGGCCATCCAGCTCACTACTGTAACA
GAAGACAAGTATGAAATACTCCAGTCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCC
CCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAGA
AACGCTATCAGTCAACGATCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTC
CGACACGCCAAGTGGTTCCAGGCCAGAGCCAATGGACTGAAGTCATGTGTCATTGTCATCCGTGTCCTAA
GGGACTTGTGTACCCGAGTGCCCACCTGGGGTCCCCTCAGAGGATGGCCTCTGGAGCTGCTGTGTGAGAA
GTCCATCGGCACTGCCAATAGGCCAATGGGTGCTGGTGAAGCCCTGCGGAGAGTGCTGGAGTGCCTGGCA
TCCGGCATCGTAATGCCAGATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTATTG
GGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGCATGCTCTGCGGCTTGCTGCCTT
TGGTCAACTCCATAAAGTACTGGGAATGGACCCCCTGCCTTCCAAAATGCCCAAGAAACCAAAGAACGAG
AACCCGGTGGACTACACTGTTCAAATTCCTCCCAGCACCACCTATGCTATCACACCCATGAAACGCCCTA
TGGAAGAGGATGGGGAGGAGAAGTCTCCCAGCAAGAAGAAAAAGAAGATCCAGAAGAAAGAGGAGAAGGC
TGATCCTCCTCAAGCTATGAATGCCCTGATGAGGTTAAATCAGCTGAAGCCAGGGCTGCAGTACAAGCTG
ATCTCCCAGACAGGCCCTGTTCATGCTCCCATCTTCACCATGTCTGTGGAGGTAGACGGCAGTAACTTCG
AGGCCTCGGGGCCATCTAAAAAGACTGCCAAGCTTCATGTAGCTGTGAAGGTGTTACAGGACATGGGCTT
GCCAACAGGCGCTGAAGGCAGAGACTCCAGCAAGGGGGAAGACTCCGCTGAGGAGTCAGATGGGAAGCCA
GCAATAGTGGCCCCACCCCCTGTGGTGGAAGCTGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCA
CTACTGAGCAGGGACCGATTTTGACTAAGCATGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACG
TGGCCTCAAATATGAGCTCATTTCTGAGACGGGGGGCAGCCACGACAAAAGGTTTGTTATGGAGGTTGAG
GTGGACGGACAGAAGTTTCAAGGTGCTGGTTCAAACAAAAAGGTGGCAAAGGCTTATGCTGCACTTGCCG
CATTAGAAAAACTTTTCCCTGATACCCCTCTTGCTCTTGAAGCCAACAAAAAGAAAAGGACCCCAGTACC
TGTCCGAGGTGGACCCAAATTTGCTGCCAAGCCACACAACCCTGGTTTTGGCATGGGAGGCCCCATGCAT
AATGAAGTGCCGCCACCTCCTAACATCCGAGGTCGGGGCCGAGGAGGTAACATCCGAGGGCGAGGACGGG
GGCGAGGATTTGGTGGCGCCAACCATGGAGGAGGCTACATGAATGCTGGTGCTGGATATGGAAGCTATGG
GTACAGCAGCAATTCGGCCACAGCAGGCTACAGTGACTTTTTCACAGACTGCTACGGCTATCATGATTTT
GGGGCTTCCTAG

Translation (703 aa):
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPD
DESKEGAGEQKAEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVT
EDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASL
RHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLA
SGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE
NPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKL
ISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEESDGKP
AIVAPPPVVEAVSNPSSVFPSDATTEQGPILTKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVE
VDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALEANKKKRTPVPVRGGPKFAAKPHNPGFGMGGPMH
NEVPPPPNIRGRGRGGNIRGRGRGRGFGGANHGGGYMNAGAGYGSYGYSSNSATAGYSDFFTDCYGYHDF
GAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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