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Report for CCDS40643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40643.1 Public Mus musculus 9 Psma4 23 108 98 CCDS HistoryNCBI Gene:26441Re-query CCDS DB by CCDS ID:40643.1Re-query CCDS DB by GeneID:26441See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034848.13 ENSMUSP00000034848.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034848.13Link to Ensembl Protein Viewer:ENSMUSP00000034848.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034848Re-query CCDS DB by Protein ID:ENSMUSP00000034848
Original member NCBI NM_011966.3 NP_036096.1 Updated not alive Link to Nucleotide Sequence:NM_011966.3Link to Protein Sequence:NP_036096.1Re-query CCDS DB by Nucleotide ID:NM_011966Re-query CCDS DB by Protein ID:NP_036096
Current member NCBI NM_011966.4 NP_036096.1 Accepted alive Link to Nucleotide Sequence:NM_011966.4Link to Protein Sequence:NP_036096.1Re-query CCDS DB by Nucleotide ID:NM_011966Re-query CCDS DB by Protein ID:NP_036096Link to BLAST:NP_036096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036096.1 261 Q9R1P0 261 100% 0 0

Chromosomal Locations for CCDS 40643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54952106 54952108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54952341 54952383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54952679 54952841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54954663 54954740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54954881 54954969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54956257 54956387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54956811 54956934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54957635 54957789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGTCTCGAAGATATGACTCCAGGACCACAATATTTTCTCCAGAAGGTCGCTTATACCAAGTGGAGTATG
CCATGGAAGCCATTGGACATGCAGGCACCTGTTTGGGGATTTTAGCCAATGATGGAGTTTTGCTTGCAGC
GGAGAGGCGCAACATCCACAAGCTTCTTGATGAAGTCTTCTTTTCTGAGAAAATTTATAAACTTAATGAG
GACATGGCTTGCAGCGTGGCAGGCATAACATCTGATGCTAACGTTCTGACTAACGAGCTAAGGCTCATTG
CTCAACGGTACTTATTACAGTATCAGGAGCCAATTCCCTGTGAGCAGTTGGTTACAGCACTGTGTGATAT
CAAACAGGCGTACACACAGTTTGGAGGCAAACGTCCCTTTGGTGTTTCTTTGCTGTATATTGGCTGGGAT
AAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCAAGTGGAAACTATGGGGGATGGAAAGCCACATGCA
TTGGGAACAACAGTGCTGCGGCTGTGTCAATGTTGAAACAAGACTACAAAGAAGGCGAAATGACTCTGAA
GTCAGCGCTTGCTCTGGCTGTTAAGGTGCTAAATAAGACAATGGATGTTAGTAAACTGTCAGCTGAAAAA
GTGGAAATCGCCACACTAACAAGAGAGAGTGGGAAGACGGTGATCAGAGTCCTCAAGCAAAAGGAAGTGG
AACAGTTGATCAAAAAACATGAAGAGGAAGAAGCTAAGGCTGAGCGGGAGAAGAAAGAAAAAGAACAGAG
AGAAAAGGATAAATAG

Translation (261 aa):
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNE
DMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWD
KHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEK
VEIATLTRESGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQREKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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