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Report for CCDS40756.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40756.2 Public Mus musculus 9 Alas1 23 108 98 CCDS HistoryNCBI Gene:11655Re-query CCDS DB by CCDS ID:40756.2Re-query CCDS DB by GeneID:11655See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 40756.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40756.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112524.8 ENSMUSP00000108143.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112524.8Link to Ensembl Protein Viewer:ENSMUSP00000108143.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112524Re-query CCDS DB by Protein ID:ENSMUSP00000108143
Original member Current member EBI ENSMUST00000141118.8 ENSMUSP00000117014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141118.8Link to Ensembl Protein Viewer:ENSMUSP00000117014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141118Re-query CCDS DB by Protein ID:ENSMUSP00000117014
Original member Current member NCBI NM_001291835.1 NP_001278764.1 Accepted alive Link to Nucleotide Sequence:NM_001291835.1Link to Protein Sequence:NP_001278764.1Re-query CCDS DB by Nucleotide ID:NM_001291835Re-query CCDS DB by Protein ID:NP_001278764Link to BLAST:NP_001278764.1
Original member Current member NCBI NM_020559.2 NP_065584.2 Accepted alive Link to Nucleotide Sequence:NM_020559.2Link to Protein Sequence:NP_065584.2Re-query CCDS DB by Nucleotide ID:NM_020559Re-query CCDS DB by Protein ID:NP_065584Link to BLAST:NP_065584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278764.1 642 Q8VC19 642 100% 0 0
NP_065584.2 642 Q8VC19 642 100% 0 0

Chromosomal Locations for CCDS 40756.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106234037 106234197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106235388 106235550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106236440 106236708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106238075 106238239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106238643 106238822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106239532 106239716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106241116 106241338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106241636 106241785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106243162 106243395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106246759 106246957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGAGACTGTCGTTCGCCGATGCCCATTCTTATCCCGAGTCCCTCAGGCCTTTCTGCAGAAGGCAGGAA
AGTCTCTGTTGTTCTATGCTCAAAACTGCCCCAAGATGATGGAAGTTGGGGCCAAGCCAGCTCCTCGAAC
CCTGTCCACATCAGCTGTCCACTGCCAGCAGGTCAAAGAAACCCCTCCAGCCAATGAGAAAGAGAAAACT
GCCAAGGCCGCAGTCCAGCAGGCTCCTGACGAGTCCCAGATGGCACAGACTCCAGACGGCACACAGCTTC
CGTCTGGACACCCGTCCCCTGCTACAAGCCAGGGCTCTGGGAGCAAGTGCCCTTTCCTGGCAGCACAGCT
GAGCCAGACAGGCAGCAGCGTCTTCCGCAAGGCCAGTCTGGAGCTCCAGGAGGACGTGCAGGAAATGCAT
GCTGTGAGGAAAGAGGCTGCTCAAAGCCCAGTGCCTCCCAGCCTGGTTAATGTGAAAACCGATGGAGAGG
ATCCAAGCCGACTGCTGAAGAACTTCCAGGACATCATGCGAAAGCAGAGGCCAGAAAGAGTGTCTCATCT
TCTTCAGGATAACTTGCCAAAGTCTGTTTCCACTTTTCAATATGATCATTTCTTTGAGAAGAAAATTGAT
GAGAAAAAAAATGATCATACCTACCGAGTTTTTAAAACGGTGAACCGGAGAGCACAAATCTTCCCGATGG
CGGATGACTACACGGATTCCCTCATAACCAAAAAGCAGGTGTCGGTCTGGTGCAGTAATGACTACCTAGG
CATGAGTCGACACCCACGGGTGTGTGGGGCTGTCATGGAGACTGTGAAACAGCATGGTGCTGGAGCTGGG
GGAACTAGGAATATTTCTGGAACGAGCAAGTTCCACGTAGAACTGGAGCAGGCACTGGCCGACCTCCACG
GCAAAGATGCGGCGCTCTTGTTCTCTTCCTGTTTTGTGGCCAACGACTCCACCCTCTTCACCCTGGCTAA
GATGATGCCAGGCTGTGAAATTTACTCTGATTCCGGGAACCATGCCTCCATGATCCAAGGGATTCGCAAC
AGTCGAGTGCCAAAATATATCTTCCGCCACAATGACGTTAACCATCTCAGAGAACTGCTGCAGAGATCTG
ACCCCTCAGTCCCCAAGATAGTAGCATTTGAAACTGTCCATTCAATGGATGGAGCAGTGTGCCCACTGGA
AGAGCTGTGTGACGTGGCCCATGAGTTTGGGGCAATCACGTTTGTGGATGAGGTCCATGCAGTGGGGCTC
TATGGAGCTCGAGGTGGAGGGATCGGTGATCGGGATGGCGTCATGCCAAAAATGGACATCATCTCTGGGA
CGCTTGGTAAAGCGTTCGGCTGTGTTGGAGGATACATTGCCAGCACGAGTTTGCTGATCGACACCGTCCG
CTCCTACGCTGCGGGCTTCATCTTCACCACCTCCTTGCCACCAATGCTGCTGGCTGGAGCCCTGGAGTCT
GTGCGGATCCTGAAGAGCAGCGAGGGGCGCGCCCTTCGCCGCCAGCACCAGCGAAATGTCAAGCTTCTGA
GGCAGATGCTAATGGACGCTGGCCTCCCGGTCATCCACTGTCCGAGTCACATCATCCCTGTGCGGGTTGC
CGATGCTGCTAAGAACACAGAGATCTGTGATGAGTTGATGACCAGGCATAATATCTACGTCCAGGCCATC
AATTACCCAACAGTGCCTCGCGGGGAGGAGCTCCTGCGGATCGCCCCCACCCCGCATCACACCCCGCAGA
TGATGAACTTCTTCGTGGAGAAGCTGCTGGTCACGTGGAAGCGAGTTGGGCTGGAACTTAAGCCACATTC
GTCAGCTGAATGCAACTTCTGCAGGAGGCCCCTGCACTTTGAAGTGATGAGCGAAAGAGAGAAAGCCTAT
TTCTCAGGCATGAGCAAGATGGTGTCTGCCCAGGCCTGA

Translation (642 aa):
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGAKPAPRTLSTSAVHCQQVKETPPANEKEKT
AKAAVQQAPDESQMAQTPDGTQLPSGHPSPATSQGSGSKCPFLAAQLSQTGSSVFRKASLELQEDVQEMH
AVRKEAAQSPVPPSLVNVKTDGEDPSRLLKNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDHFFEKKID
EKKNDHTYRVFKTVNRRAQIFPMADDYTDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMETVKQHGAGAG
GTRNISGTSKFHVELEQALADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRN
SRVPKYIFRHNDVNHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSLLIDTVRSYAAGFIFTTSLPPMLLAGALES
VRILKSSEGRALRRQHQRNVKLLRQMLMDAGLPVIHCPSHIIPVRVADAAKNTEICDELMTRHNIYVQAI
NYPTVPRGEELLRIAPTPHHTPQMMNFFVEKLLVTWKRVGLELKPHSSAECNFCRRPLHFEVMSEREKAY
FSGMSKMVSAQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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