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Report for CCDS40845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40845.1 Public Mus musculus X Hdac6 23 108 98 CCDS HistoryNCBI Gene:15185Re-query CCDS DB by CCDS ID:40845.1Re-query CCDS DB by GeneID:15185See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033501.14 ENSMUSP00000033501.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033501.14Link to Ensembl Protein Viewer:ENSMUSP00000033501.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033501Re-query CCDS DB by Protein ID:ENSMUSP00000033501
Original member Current member EBI ENSMUST00000115642.7 ENSMUSP00000111306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115642.7Link to Ensembl Protein Viewer:ENSMUSP00000111306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115642Re-query CCDS DB by Protein ID:ENSMUSP00000111306
Original member NCBI NM_001130416.1 NP_001123888.1 Updated not alive Link to Nucleotide Sequence:NM_001130416.1Link to Protein Sequence:NP_001123888.1Re-query CCDS DB by Nucleotide ID:NM_001130416Re-query CCDS DB by Protein ID:NP_001123888
Current member NCBI NM_001130416.2 NP_001123888.1 Accepted alive Link to Nucleotide Sequence:NM_001130416.2Link to Protein Sequence:NP_001123888.1Re-query CCDS DB by Nucleotide ID:NM_001130416Re-query CCDS DB by Protein ID:NP_001123888Link to BLAST:NP_001123888.1
Original member NCBI NM_010413.3 NP_034543.3 Updated not alive Link to Nucleotide Sequence:NM_010413.3Link to Protein Sequence:NP_034543.3Re-query CCDS DB by Nucleotide ID:NM_010413Re-query CCDS DB by Protein ID:NP_034543
Current member NCBI NM_010413.4 NP_034543.3 Accepted alive Link to Nucleotide Sequence:NM_010413.4Link to Protein Sequence:NP_034543.3Re-query CCDS DB by Nucleotide ID:NM_010413Re-query CCDS DB by Protein ID:NP_034543Link to BLAST:NP_034543.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123888.1 1149 Q9Z2V5 1149 100% 0 0
NP_034543.3 1149 Q9Z2V5 1149 100% 0 0

Chromosomal Locations for CCDS 40845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7930469 7930537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7930784 7930912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7931009 7931155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7931280 7931381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7931466 7931959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7932063 7932237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7934172 7934321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7936070 7936262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7936382 7936450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7936942 7937075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7937304 7937472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7937627 7937755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7937843 7938011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7938226 7938293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7938386 7938492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7939443 7939532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7939606 7939665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7939760 7939825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7939918 7940044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7941844 7941912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7942033 7942137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7943387 7943484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7943641 7943737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7944574 7944614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7944714 7944798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7946663 7946751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7946903 7947031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7947125 7947214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3450 nt):
ATGACCTCCACCGGCCAAGATTCTTCTACTAGACAGCGAAAGAGTAGGCACAATCCCCAGTCACCCCTTC
AGGAATCCAGCGCCACCTTGAAGCGTGGTGGAAAGAAGTGTGCTGTACCCCACTCCAGCCCCAATCTAGC
GGAGGTAAAGAAGAAAGGCAAAATGAAGAAGCTGAGCCAACCAGCTGAAGAGGACCTAGTTGTGGGGCTT
CAAGGGCTGGATCTGAACCCTGAGACAAGAGTGCCAGTTGGTACTGGATTGGTGTTTGATGAACAACTAA
ATGACTTCCATTGCCTTTGGGATGACAGCTTCCCTGAAAGCCCTGAGCGGCTCCATGCCATCAGAGAGCA
ACTGATCCTGGAGGGCCTCCTGGGCCGCTGTGTGTCCTTTCAGGCCCGGTTCGCTGAGAAGGAGGAGCTG
ATGTTGGTTCACAGCCTGGAATACATTGATCTGATGGAGACAACCCAGTACATGAATGAAGGGGAGCTTC
GAGTACTGGCAGAAACCTATGATTCAGTGTATCTGCATCCGAACTCATATTCCTGTGCCTGCCTGGCTAC
AGGCTCTGTCCTCCGGCTGGTAGATGCACTCATGGGGGCTGAGATTCGGAATGGCATGGCCGTCATCAGG
CCTCCTGGACACCATGCTCAGCACAATCTTATGGATGGGTATTGCATGTTCAACCATCTGGCTGTGGCTG
CCCGCTATGCGCAAAAGAAGCACCGCATTCAGAGGGTTCTCATCGTGGACTGGGATGTGCACCATGGTCA
AGGAACACAGTTCATCTTCGACCAGGACCCCAGTGTCCTTTATTTCTCCATCCACCGATATGAACATGGT
CGCTTCTGGCCCCACCTTAAGGCTTCTAACTGGTCCACTATAGGTTTTGGCCAAGGCCAAGGATATACCA
TCAATGTACCTTGGAACCAGACGGGCATGCGGGACGCTGACTACATTGCTGCTTTCCTGCACATCCTGCT
GCCAGTTGCCTCGGAGTTTCAGCCTCAACTGGTCTTGGTGGCCGCTGGATTTGATGCCCTCCACGGAGAC
CCCAAGGGAGAGATGGCTGCCACGCCAGCAGGATTTGCCCACCTAACCCATTTGCTCATGGGTTTGGCAG
GAGGCAAGTTGATTCTGTCCCTGGAGGGTGGCTATAACCTCCGTGCCCTGGCTAAGGGAGTCAGTGCTTC
ACTCCACACCCTTCTTGGAGACCCTTGCCCCATGCTGGAGTCCTGTGTTGTACCTTGTGCAAGCGCCCAG
ACTTCCATCTACTGCACTCTAGAAGCCCTTGAACCCTTCTGGGAGGTCCTGGAGAGATCAGTTGAGACCC
AGGAGGAAGATGAAGTGGAAGAAGCCGTGCTAGAAGAGGAGGAGGAGGAAGGTGGCTGGGAGGCCACTGC
ACTGCCCATGGATACATGGCCACTGCTCCAGAACCGCACTGGGCTGGTCTATGATGAGAAGATGATGAGT
CACTGCAACCTCTGGGACAATCATCACCCTGAGACACCTCAGCGCATCTTACGCATCATGTGTCACCTGG
AGGAGGTGGGCCTTGCGGCTCGCTGTCTCATCCTACCTGCTCGGCCTGCCCTGGACTCTGAGCTCCTTAC
CTGCCACAGTGCTGAGTACGTGGAGCATCTCCGCACCACAGAAAAGATGAAAACCCGGGATCTGCACCGT
GAAGGTGCCAACTTTGACTCCATCTACATCTGCCCCAGCACCTTTGCCTGCGCAAAGCTTGCCACAGGCG
CTGCCTGCCGCCTGGTGGAAGCTGTGCTCTCGGGAGAGGTTCTAAATGGCATTGCAGTAGTGCGCCCTCC
AGGACACCACGCGGAGCCAAATGCTGCCTGTGGTTTCTGCTTTTTCAACTCAGTAGCTGTAGCTGCTCGC
CATGCCCAGATCATTGCTGGACGTGCCCTGCGGATCCTAATCGTGGATTGGGATGTTCATCATGGTAATG
GAACTCAGCACATATTTGAGGATGACCCTAGTGTATTATACGTGTCCCTGCACCGGTATGACCGTGGCAC
TTTCTTCCCCATGGGGGATGAGGGTGCCAGTAGCCAAGTAGGCCGAGATGCAGGTATAGGCTTCACTGTC
AATGTGCCCTGGAATGGGCCCCGCATGGGTGATGCTGATTACCTGGCTGCATGGCATCGTCTGGTACTTC
CCATCGCCTATGAGTTTAACCCAGAACTGGTGCTGATCTCAGCTGGCTTTGATGCTGCACAAGGGGATCC
GCTGGGGGGCTGCCAAGTAACACCGGAGGGTTATGCCCACCTCACCCACCTACTGATGGGCCTTGCTGGT
GGCCGTATTATTCTTATTCTAGAGGGTGGATACAATTTGGCATCTATCTCTGAGTCTATGGCTGCCTGCA
CCCATTCCCTCCTTGGAGACCCACCACCCCAGCTTACTTTGCTGCGACCGCCACAGTCAGGAGCCCTGGT
TTCAATCAGTGAGGTCATCCAAGTCCATCGCAAATACTGGCGCAGTTTGCGGTTGATGAAAATGGAAGAC
AAGGAAGAATGCTCTAGTTCTAGGCTTGTCATCAAGAAGTTGCCCCCAACAGCCAGTCCTGTATCAGCTA
AGGAAATGACCACACCGAAAGGAAAGGTTCCTGAAGAAAGCGTGAGGAAGACCATAGCAGCACTACCTGG
GAAAGAGTCTACTCTAGGCCAGGCTAAATCAAAGATGGCTAAGGCTGTGCTTGCTCAGGGCCAGTCCTCA
GAACAAGCTGCTAAGGGAACTACACTGGATCTGGCTACCTCAAAGGAGACTGTGGGAGGAGCCACGACGG
ACCTGTGGGCCTCAGCAGCTGCTCCTGAAAACTTCCCTAACCAGACCACCTCTGTGGAGGCTTTGGGAGA
AACTGAGCCAACGCCTCCAGCCTCGCATACAAACAAGCAGACCACAGGGGCTTCACCTCTGCAGGGAGTC
ACGGCTCAGCAGTCCCTACAGCTTGGGGTTCTCAGCACTTTGGAGCTAAGCAGAGAAGCAGAGGAAGCCC
ATGATTCTGAGGAGGGCCTGCTAGGGGAAGCCGCTGGAGGTCAGGACATGAACAGCTTGATGCTGACACA
AGGATTTGGGGACTTTAATACCCAGGATGTATTTTATGCTGTGACCCCACTATCCTGGTGTCCCCATTTG
ATGGCAGTATGCCCCATTCCTGCAGCAGGCCTAGATGTGTCCCAACCTTGTAAGACCTGTGGAACAGTCC
AGGAGAACTGGGTGTGTCTGACTTGCTATCAGGTGTACTGCAGTCGCTATGTCAATGCCCATATGGTCTG
CCACCATGAAGCCTCTGAACACCCGCTGGTCCTCAGCTGTGTTGACCTGTCTACCTGGTGTTATGTCTGT
CAGGCTTATGTCCACCACGAGGATCTCCAAGATGTGAAGAACGCTGCCCACCAGAACAAGTTTGGGGAGG
ACATGCCCCACTCACACTAA

Translation (1149 aa):
MTSTGQDSSTRQRKSRHNPQSPLQESSATLKRGGKKCAVPHSSPNLAEVKKKGKMKKLSQPAEEDLVVGL
QGLDLNPETRVPVGTGLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQARFAEKEEL
MLVHSLEYIDLMETTQYMNEGELRVLAETYDSVYLHPNSYSCACLATGSVLRLVDALMGAEIRNGMAVIR
PPGHHAQHNLMDGYCMFNHLAVAARYAQKKHRIQRVLIVDWDVHHGQGTQFIFDQDPSVLYFSIHRYEHG
RFWPHLKASNWSTIGFGQGQGYTINVPWNQTGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALHGD
PKGEMAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLESCVVPCASAQ
TSIYCTLEALEPFWEVLERSVETQEEDEVEEAVLEEEEEEGGWEATALPMDTWPLLQNRTGLVYDEKMMS
HCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALDSELLTCHSAEYVEHLRTTEKMKTRDLHR
EGANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPGHHAEPNAACGFCFFNSVAVAAR
HAQIIAGRALRILIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTV
NVPWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAG
GRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQSGALVSISEVIQVHRKYWRSLRLMKMED
KEECSSSRLVIKKLPPTASPVSAKEMTTPKGKVPEESVRKTIAALPGKESTLGQAKSKMAKAVLAQGQSS
EQAAKGTTLDLATSKETVGGATTDLWASAAAPENFPNQTTSVEALGETEPTPPASHTNKQTTGASPLQGV
TAQQSLQLGVLSTLELSREAEEAHDSEEGLLGEAAGGQDMNSLMLTQGFGDFNTQDVFYAVTPLSWCPHL
MAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVC
QAYVHHEDLQDVKNAAHQNKFGEDMPHSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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