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Report for CCDS40873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40873.1 Public Mus musculus X Bcor 23 108 98 CCDS HistoryNCBI Gene:71458Re-query CCDS DB by CCDS ID:40873.1Re-query CCDS DB by GeneID:71458See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115513.8 ENSMUSP00000111175.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115513.8Link to Ensembl Protein Viewer:ENSMUSP00000111175.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115513Re-query CCDS DB by Protein ID:ENSMUSP00000111175
Original member Current member NCBI NM_029510.3 NP_083786.2 Accepted alive Link to Nucleotide Sequence:NM_029510.3Link to Protein Sequence:NP_083786.2Re-query CCDS DB by Nucleotide ID:NM_029510Re-query CCDS DB by Protein ID:NP_083786Link to BLAST:NP_083786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083786.2 1759 Q8CGN4-1 1759 100% 0 0

Chromosomal Locations for CCDS 40873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 12037626 12037917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12038912 12039068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12039250 12039327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12040385 12040530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12041502 12041668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12046856 12047113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12047423 12047748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048303 12048647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048995 12049252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12054969 12055155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12055639 12055692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12056344 12059190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12060130 12060208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12061522 12061607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5280 nt):
ATGCTTTCTGCAACCCCTCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTG
GA
ACAAGTGAAGACAGGAAAATTCCTGTGAATGATGGCGACGCTTCAAAAGCCAGGCTGGAGCTGAGGGA
G
GAGACTCCCCTGAGTCACAGCGTGGTGGATACCAGTGGAGCCCATCGGATCGATGGCCTGGCAGCACTG
AGC
ATGGACCGCACAGGCCTCATCCGGGAAGGGCTCCGGGTCCCTGGAAACATCGTTTATTCTGGCTTGT
GT
GGATTGGGCTCAGAAAAAGGTCGGGAGGCTACCCCAAGCTCTCTCAGTGGCCTTGGGTTTTCTTCGGA
A
AGAAATCCAGAGATGCAATTCAAACCGAATACTCCCGAGACAGTGGAGGCTTCTGCTGTCTCTGGAAAA
CCC
CCAAATGGCTTCAGTGCTATATACAAAACACCGCCTGGGATACAAAAGAGCGCTGTAGCTACAGCGG
AA
AGCTTGGGTTTGGATAGGCCTGCCAGTGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTACCT
G
CGGCTGCCCTGGGTCAACCCTTACATGGAGGGGGCCACTCCAGCCATATACCCTTTCCTCGACTCGCCA
AAT
AAGTATTCACTGAATATGTACAAGGCCTTGCTACCTCAGCAGTCCTACGGCTTGGCCCAGCCACTGT
AT
TCTCCTGTCTGCACCAGTGGGGAACGCTTCCTCTACCTGCCACCCCCACACTATGTCAACCCTCACAT
C
CCCTCCTCCTTGGCTTCACCCATGAGGCTCTCCACACCTTCAGCCTCTGCGGCCATTCCACCTCTCGTC
CAC
TGCTCAGACAAAAGCCTCCCATGGAAGATGGGCGTCAACCCTGGGAACCCAGTAGATTCCCACAGTT
AC
CCCCACATCCAAAACAGTAAACAGCCCCGGGTGACCTCTGCCAAGGCAGTCAATAGTGGCCTGCCAGG
G
GACACAGCTCTCCTGTTGCCTCCTTCACCTCGGCCCTCAGCCCGGGTCCACCTTCCAACTCAGCCCGCT
GCA
GAGACCTACTCCGAGTTCCACAAGCACTATCCCAGGATCTCCACCTCTCCCTCAGTCACCCTGACGA
AG
CCATACATGACAGCCAATAGCGAGTTCTCTACATCCAGGCTGTCCAATGGCAAGTACCCCAAGGCTCT
A
GATGGGGGCGACTGTGCTCAATCCATGCCTGGGCACACCCGGAAGACAACGGTTCAAGACAGAAAAGAT
GGG
GGCTCACCACCTCTGTTGGAAAAGCAGACCGTTACCAAAGATGTCACAGACAAACCACTTGACCTGT
CT
TCTAAAGTGGTGGATGCGGACGCTTCCAAAGGTGACCACATGAAAAAGATGGCTCCCACAGTCCTGGT
T
CACAGTCGGGCTGCAAGTGGCTTAGTGCTCTCTGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCA
GGA
AATGGATGTTCTATCTATAGATCAGAGATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCAGGGC
CA
AGTCCTAATGAAGAGAACAATGGCAAAAGTCTGTCACTGAAAAACAAGGCTTTGGACTGGGCAATACC
G
CAACAGCGGAGTTCCTCGTGTCCCCGCATGGGTGGCACAGATGCCGTGGTCACTAATGTTTCAGGGTCC
GTG
TCCAGCTCAGGACGCCCAGCCTCTGCATCACCAGCCCCCAACGCCAACGCCAATGCAGATGGCACCA
AG
ACCAGCAGGAGCTCGGTGGATACCACGCCATCAGTCATCCAGCATGTGGGCCAGCCCTCATCCACGCC
T
GCCAAGCACGGTGGCAGCACCAGCAGCAAGGGAGCCAAAGCCAACCCAGAACCGAGCTTCAAAGCGAGT
GAG
AATGGCCTCCCGCCAACCTCAATATTTCTATCTCCAAATGAAGCATTCAGGTCCCCAGCAATTCCCT
AC
CCTAGGAGTTACCTCCCTTACGCAGCACCAGAAGGCATCGCTCTAAGTCCCCTCTCTTTACATGGCAA
A
GGACCTGTGTATCCTCACCCAGTTTTGTTACCCAATGGCAGTCTGTTTCCTGGGCACCTTGCCCCAAAG
CCT
GGCCTGCCTTACGGGCTGCATACGAGCAGGCCAGAATTTGTGACCTACCAAGATGCCCTGGGCCTGG
GC
ATGGTCCATCCCATGTTGATCCCACACACGCCCATTGAGATCACAAAAGAGGAGAAGCCGGAGAGACG
C
TCCCGCTCCCATGAGAGAGCCCGTTATGAGGACCCAACCCTCCGTAGCCGGTTTTCTGAGATGTTGGAA
GCT
AGCAGCACCAAACTGCATCCAGAAGTCCCCACTGACAAGAACCTGAAGCCAAACTCTAGCTGGAATC
AA
GGGAAGACTGGGGTCAAAAGCGACAAACTGGTCTACGTAGACCTTCTCCGAGAAGAAGCAGACACTAA
A
ACTGATGCAGGGGCACCCAAAGCAGGCCTTGTAGCCGAGAATGTAGGTCAGGACACCGAGGCCACCAAG
CCC
TCAGCTGACCCTGTGATCCAACAACGCCGTGAATTCATCTCCCTCAGAGAGGAGCTGGGCCGAATCA
CT
GACTTCCATGAATCTTTCACTTTCAAACAGGCCTCAAGCCAGCCAGTGTTCAGCTTAGGCAAGGATAG
T
GGTGCAGCAGGAACCAACAAAGAGAACCTGGGTGTGCAGGTAGCAACTCCATTCTTGGAGACAGCTCTG
GGC
AGTGAGGGCCCTGCTGTGACTTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCGGTG
CC
CCTCCAAACATGGATGTCACCCCCGCCTATACCAAAGAAGGAACTGATGAGGCCGAATCCAACGATGG
C
AAAGTTCTGAAACCCAAGCCATCCAAGCTGGCAAAGAGAATTGCTAACTCGGCAGGTTATGTGGGCGAC
CGA
TTCAAGTGTGTCACCACCGAACTGTATGCAGATTCCAGTCAGCTCAGCCGAGAGCAGCGGGCATTGC
AG
ATGGAAGGATTACAAGAGGACAGTATTTTATGTCTACCCGCTGCTTACTGTGAGCGTGCAATGATGCG
C
TTCTCAGAGTTGGAGATGAAAGAGAGAGAAGGTAGCCACCCAGCAACCAAAGACTCCGAGGTGTGCAAA
TTC
AGCCCAGCCGACTGGGAAAGGTTGAAAGGAAATCAGGAAAAGAAGCCAAAGTCAGTCACCCTGGAAG
AG
GCCATTGCCGACCAGAATGACAGTGAGAGATGTGAGTATAGCACTGGAAACAAACATGATCTCTTTGA
A
GCCCCAGAGGACAAAGATCTTCCTGTGGAAAAGTATTTCTTGGAGAGGCCACCTGTGAGTGAGCCACCC
AGT
GACCAGGGGGTGGTGGACACGCCACACAGCCCCACCCTCCGGCTAGACAGGAAACGCAAACTGTCAG
GT
GACAGCACCCACACTGAGACCGCTGTGGAAGAGCTAGCTGAGGACCCTCTGAAAGCCAAGCGAAGACG
G
ATCTCCAAAGATGACTGGCCTGAGAGGGAAATGACAAACAGTTCCTCTAACCACTTAGAAGACCCACAT
TGT
AATGAGCTGACCAACCTGAAGGTGTGCATTGAATTAACAGGGCTCCATCCTAAAAAGCAACGCCACT
TG
CTGCACCTTAGAGAACGGTGGGAGCAGCAGGTGTCGGCAGCCGAGAGCAAACCTGGCCGGCAAAGCAG
G
AAGGAAGTGGCCCAGGCTGTTCAGCCTGAGGTCACCTCCCAGGGGACTAACATCACTGAAGAGAAGCCT
GGC
AGGAAAAAGGCAGAGGCCAAAGGCAACAGAGGCTGGTCTGAAGAGTCGCTCAAATCCTGTGACAATG
AG
CAAGGCTTGCCTGTGCTCTCAGGCTCTCCGCCCATGAAGAGCCTTTCATCCACCAATGCAAGTGGCAA
A
AAGCAGACTCAGCCAAGCTGCACGCCAGCCTCAAGGCTGCCTGCCAAACAGCAGAAAATTAAAGAAAGC
CAG
AAGACAGATGTGCTGTGCACAGGGGAAGACGAGGATTGCCAGGCTGCCTCCCCGCTGCAAAAATACA
CA
GACAACATCGAGAAGCCATCCGGGAAGAGACTGTGCAAAACCAAGCACTTGATACCTCAGGAGTCCAG
G
AGGAGCTTGCAGATCACAGGCGACTACTATGTGGAGAACACTGACACTAAGATGACTGTGCGGAGATTC
AGA
AAACGACCTGAGCCCAGTTCGGACTACGATTTGTCACCACCAGCCAAGCAGGAGCCAAAGCCCTTTG
AC
CGTCTACAACAATTGCTACCGGCCACCCAGGCCACCCAGCTGCCACGCTCAAATTCTCCTCAAGAGAC
C
ACCCAGTCTCGCCCCATGCCGCCAGAAGCTCGGAGACTTATTGTCAATAAGAATGCTGGCGAGACCCTC
CTG
CAGCGGGCTGCCCGGCTAGGCTATGAGGAAGTGGTCTTATATTGCCTGGAGAACAAGGTCTGTGATG
TC
AATCATCGAGACAATGCTGGCTACTGTGCTCTGCATGAAGCTTGCGCCAGGGGATGGCTCAACATCGT
G
CGCCACCTCCTTGAATATGGCGCTGATGTCAACTGCAGTGCCCAGGATGGAACCAGGCCTCTGCATGAT
GCT
GTGGAGAATGACCACTTAGAAATTGTACGATTGCTTCTTTCCTATGGTGCTGACCCTACTTTGGCCA
CA
TACTCAGGGAGAACCATCATGAAAATGACCCACAGTGAACTTATGGAGAAGTTTTTAACAGACTATTT
A
AATGACCTGCAGGGTCGCAGTGAAGATGACACCAGCGGCGCTTGGGAGTTCTATGGCAGCTCTGTGTGT
G
AA
CCAGATGACGAAAGTGGGTACGATGTTTTGGCTAATCCCCCAGGACCAGAAGACCCAGATGAGGAAG
AG
GATACCTATAGCGATTTGTTTGAGTTTGAGTTTGCTGAAAGCTCCCTCTTGCCGTGTTATAACATCCA
A
GTGTCTGTCGCTCAGGGGCCACGAAACTGGCTTCTGCTCTCAGACGTGCTCAAGAAGTTGAAAATGTCC
TCC
CGGATATTCCGTAGCAATTTTCCCAATCTGGAAATTGTCACCATTGCAGAGGCGGAGTTTTACCGAC
AG
GTCTCAACAAGTCTCTTGTTCTCCTGCCCCAAAGACCTGGAAGCCTTCAATCCTGAAAGCAAGGAGCT
G
TTGGATCTGGTGGAATTCACCAATGAGCTCCAGACACTGCTGGGCTCCTCTGTGGAGTGGCTCCACCCT
AGT
GACACGGGCCATGAAAACTACTGGTGA


Translation (1759 aa):
MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLELREETPLSHSVVDTSGAHRIDGLAAL
S
MDRTGLIREGLRVPGNIVYSGLCGLGSEKGREATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGK
P
PNGFSAIYKTPPGIQKSAVATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSP
N
KYSLNMYKALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLV
H
CSDKSLPWKMGVNPGNPVDSHSYPHIQNSKQPRVTSAKAVNSGLPGDTALLLPPSPRPSARVHLPTQPA
A
ETYSEFHKHYPRISTSPSVTLTKPYMTANSEFSTSRLSNGKYPKALDGGDCAQSMPGHTRKTTVQDRKD
G
GSPPLLEKQTVTKDVTDKPLDLSSKVVDADASKGDHMKKMAPTVLVHSRAASGLVLSGSEIPKETLSPP
G
NGCSIYRSEIISTAPSSWVVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVVTNVSGS
V
SSSGRPASASPAPNANANADGTKTSRSSVDTTPSVIQHVGQPSSTPAKHGGSTSSKGAKANPEPSFKAS
E
NGLPPTSIFLSPNEAFRSPAIPYPRSYLPYAAPEGIALSPLSLHGKGPVYPHPVLLPNGSLFPGHLAPK
P
GLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEEKPERRSRSHERARYEDPTLRSRFSEMLE
A
SSTKLHPEVPTDKNLKPNSSWNQGKTGVKSDKLVYVDLLREEADTKTDAGAPKAGLVAENVGQDTEATK
P
SADPVIQQRREFISLREELGRITDFHESFTFKQASSQPVFSLGKDSGAAGTNKENLGVQVATPFLETAL
G
SEGPAVTFGKTQEDPKPFCVGGAPPNMDVTPAYTKEGTDEAESNDGKVLKPKPSKLAKRIANSAGYVGD
R
FKCVTTELYADSSQLSREQRALQ
MEGLQEDSILCLPAAYCERAMMRFSELEMKEREGSHPATKDSEVCK
F
SPADWERLKGNQEKKPKSVTLEEAIADQNDSER
CEYSTGNKHDLFEAPEDKDLPVEKYFLERPPVSEPP
S
DQGVVDTPHSPTLRLDRKRKLSGDSTHTETAVEELAEDPLKAKRRRISK
DDWPEREMTNSSSNHLEDPH
C
NELTNLKVCIELTGLHPKKQRHLLHLRERWEQQVSAAESKPGRQSRKEVAQAVQPEVTSQGTNITEEKP
G
RKKAEAKGNRGWSEESLKSCDNEQ
GLPVLSGSPPMKSLSSTNASGKKQTQPSCTPASRLPAKQQKIKES
Q
KTDVLCTGEDEDCQAASPLQKYTDNIEKPSGKRLCKTKHLIPQESRRSLQITGDYYVENTDTK
MTVRRF
R
KRPEPSSDYDLSPPAKQEPKPFDRLQQLLPATQATQLPRSNSPQETTQSRPMPPEARRLIVNKNAGETL
L
QRAARLGYE
EVVLYCLENKVCDVNHRDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHD
A
VENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEKFLT
DYLNDLQGRSEDDTSGAWEFYGSSVC
E
PDDESGYDVLANPPGPEDPDEEEDTYSDLFEFEFAESSLLPCYNIQVSVAQGPRNWLLLSDVLKKLKMS
S
RIFRSNFPNLEIVTIAEAEFYRQVSTSLLFSCPKDLEAFNPESKELLDLVEFTNELQTLLGSSVEWLHP
S
DTGHENYW




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser