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Report for CCDS41016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41016.1 Public Mus musculus X Mecp2 23 108 98 CCDS HistoryNCBI Gene:17257Re-query CCDS DB by CCDS ID:41016.1Re-query CCDS DB by GeneID:17257See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033770.12 ENSMUSP00000033770.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033770.12Link to Ensembl Protein Viewer:ENSMUSP00000033770.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033770Re-query CCDS DB by Protein ID:ENSMUSP00000033770
Original member Current member NCBI NM_001081979.2 NP_001075448.1 Accepted alive Link to Nucleotide Sequence:NM_001081979.2Link to Protein Sequence:NP_001075448.1Re-query CCDS DB by Nucleotide ID:NM_001081979Re-query CCDS DB by Protein ID:NP_001075448Link to BLAST:NP_001075448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075448.1 501 Q9Z2D6-2 501 100% 0 0

Chromosomal Locations for CCDS 41016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74035417 74036494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74036982 74037332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74085510 74085586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCCGCCGCTGCCGCCACCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGG
AGAGACTGGAGGAAAAGTCAGAAGACCAGGATCTCCAGGGCCTCAGAGACAAGCCACTGAAGTTTAAGAA
GGCGAAGAAAGACAAGAAGGAGGACAAAGAAGGCAAGCATGAGCCACTACAACCTTCAGCCCACCATTCT
GCAGAGCCAGCAGAGGCAGGCAAAGCAGAAACATCAGAAAGCTCAGGCTCTGCCCCAGCAGTGCCAGAAG
CCTCGGCTTCCCCCAAACAGCGGCGCTCCATTATCCGTGACCGGGGACCTATGTATGATGACCCCACCTT
GCCTGAAGGTTGGACACGAAAGCTTAAACAAAGGAAGTCTGGCCGATCTGCTGGAAAGTATGATGTATAT
TTGATCAATCCCCAGGGAAAAGCTTTTCGCTCTAAAGTAGAATTGATTGCATACTTTGAAAAGGTGGGAG
ACACCTCCTTGGACCCTAATGATTTTGACTTCACGGTAACTGGGAGAGGGAGCCCCTCCAGGAGAGAGCA
GAAACCACCTAAGAAGCCCAAATCTCCCAAAGCTCCAGGAACTGGCAGGGGTCGGGGACGCCCCAAAGGG
AGCGGCACTGGGAGACCAAAGGCAGCAGCATCAGAAGGTGTTCAGGTGAAAAGGGTCCTGGAGAAGAGCC
CTGGGAAACTTGTTGTCAAGATGCCTTTCCAAGCATCGCCTGGGGGTAAGGGTGAGGGAGGTGGGGCTAC
CACATCTGCCCAGGTCATGGTGATCAAACGCCCTGGCAGAAAGCGAAAAGCTGAAGCTGACCCCCAGGCC
ATTCCTAAGAAACGGGGTAGAAAGCCTGGGAGTGTGGTGGCAGCTGCTGCAGCTGAGGCCAAAAAGAAAG
CCGTGAAGGAGTCTTCCATACGGTCTGTGCATGAGACTGTGCTCCCCATCAAGAAGCGCAAGACCCGGGA
GACGGTCAGCATCGAGGTCAAGGAAGTGGTGAAGCCCCTGCTGGTGTCCACCCTTGGTGAGAAAAGCGGG
AAGGGACTGAAGACCTGCAAGAGCCCTGGGCGTAAAAGCAAGGAGAGCAGCCCCAAGGGGCGCAGCAGCA
GTGCCTCCTCCCCACCTAAGAAGGAGCACCATCATCACCACCATCACTCAGAGTCCACAAAGGCCCCCAT
GCCACTGCTCCCATCCCCACCCCCACCTGAGCCTGAGAGCTCTGAGGACCCCATCAGCCCCCCTGAGCCT
CAGGACTTGAGCAGCAGCATCTGCAAAGAAGAGAAGATGCCCCGAGGAGGCTCACTGGAAAGCGATGGCT
GCCCCAAGGAGCCAGCTAAGACTCAGCCTATGGTCGCCACCACTACCACAGTTGCAGAAAAGTACAAACA
CCGAGGGGAGGGAGAGCGCAAAGACATTGTTTCATCTTCCATGCCAAGGCCAAACAGAGAGGAGCCTGTG
GACAGCCGGACGCCCGTGACCGAGAGAGTTAGCTGA

Translation (501 aa):
MAAAAATAAAAAAPSGGGGGGEEERLEEKSEDQDLQGLRDKPLKFKKAKKDKKEDKEGKHEPLQPSAHHS
AEPAEAGKAETSESSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVY
LINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKG
SGTGRPKAAASEGVQVKRVLEKSPGKLVVKMPFQASPGGKGEGGGATTSAQVMVIKRPGRKRKAEADPQA
IPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVHETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSG
KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESTKAPMPLLPSPPPPEPESSEDPISPPEP
QDLSSSICKEEKMPRGGSLESDGCPKEPAKTQPMVATTTTVAEKYKHRGEGERKDIVSSSMPRPNREEPV
DSRTPVTERVS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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