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Report for CCDS41070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41070.1 Public Mus musculus X Pja1 23 108 98 CCDS HistoryNCBI Gene:18744Re-query CCDS DB by CCDS ID:41070.1Re-query CCDS DB by GeneID:18744See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036354.6 ENSMUSP00000109420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036354.6Link to Ensembl Protein Viewer:ENSMUSP00000109420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000036354Re-query CCDS DB by Protein ID:ENSMUSP00000109420
Original member Current member EBI ENSMUST00000113792.1 ENSMUSP00000109423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113792.1Link to Ensembl Protein Viewer:ENSMUSP00000109423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113792Re-query CCDS DB by Protein ID:ENSMUSP00000109423
Original member Current member EBI ENSMUST00000167246.1 ENSMUSP00000132393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167246.1Link to Ensembl Protein Viewer:ENSMUSP00000132393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167246Re-query CCDS DB by Protein ID:ENSMUSP00000132393
Original member NCBI NM_001083110.2 NP_001076579.1 Updated not alive Link to Nucleotide Sequence:NM_001083110.2Link to Protein Sequence:NP_001076579.1Re-query CCDS DB by Nucleotide ID:NM_001083110Re-query CCDS DB by Protein ID:NP_001076579
Current member NCBI NM_001083110.3 NP_001076579.1 Accepted alive Link to Nucleotide Sequence:NM_001083110.3Link to Protein Sequence:NP_001076579.1Re-query CCDS DB by Nucleotide ID:NM_001083110Re-query CCDS DB by Protein ID:NP_001076579Link to BLAST:NP_001076579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076579.1 578 O55176-3 578 100% 0 0

Chromosomal Locations for CCDS 41070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99466565 99468301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAGCCACCAGGAAAGGATTGCCAGCCAGAGGAGGACAACAGCCGAAGTCCCAATGCACAGATCAACTG
CCAATCAAAGCAAGAGGAGCCGGTCACCATTTGCCAGCACACGTCGTCGCTGGGATGACAGCGAGAGCTC
GGGAGCCAGCCTGGCTGTTGAGAGTGAGGATTATTCCAGGTATCCTCCAAGAGAGTACAGGGCCTCGGGG
AGCCGAAGAGGATTGGCTTATGGACACATTGACACTGTAGTGGCTCGTGATAGTGAGGAGGAGGGGGCTG
GGCCTGTTGACCGACTGCCAGTGAGAGGGAAAGCTGGCAAGTTTAAGGATGATCCCGAGAAGGGGGCAAG
GTCTTCCCGCTTTACTAGTGTTAACCATGATGCGAAGGAAGAGTGTGGCAAGGTAGAATCACCCCCTGCA
GCGAGGTGCTCGGCTCGCAGAGCTGAGCTCTCGAAGCAGAATGGCTCCTCGGCCTCTCAGATTTCTTCTG
CTGAAGGCAGGGCAGCTGCAAAAGGTAACAACAGCTTGGAGAGGGAGAGGCAGAATTTACCAGCTCGTCC
TAGCAGGGCTCCTGTGAGTATTTGTGGTGGTGGGGAAAACACCCCAAAGAGTGCCGAGGAACCGGTGGTG
AGACCCAAAGTCCGGAATGTGGCGACTCCAAACTGCATGAAACCCAAAGTGTTTTTTGATACTGATGATG
ATGATGATGTACCACACAGTACTTCCAGGTGGCGGGATGCTGCCGATGCTGAGGAGGCTCATGCCGAGGG
CCTAGCCAGAAGAGGCCGAGGTGAGGCTGCCAGCAGCTCAGAGCCAAGGTATGCTGAAGACCAGGATGCC
AGGAGTGAACAAGCGAAGGCAGACAAAGTGCCAAGACGGCGGCGAACCATGGCAGACCCTGACTTCTGGG
CATACACCGACGATTACTACCGATACTACGAGGAAGATTCTGACAGCGACAAAGAGTGGATGGCTGCCCT
GCGCAGGAAGTACCGAAGCCGAGAGCAACCCCAGTCCTCCAGCGGAGAAAGCTGGGAGCTTCTGCCAGGA
AAGGAAGAACTGGAACGTCAGCAAGCCGGAGCTGGGAGCCTCGCCAGTGCTGGCAGCAATGGCAGTGGTT
ATCCTGAAGAAGTACAAGACCCATCTCTTCAGGAGGAAGAACAGGCCTCTCTGGAAGAAGGAGAAATCCC
TTGGCTTCGCTACAATGAGAATGAAAGCAGCAGCGAGGGTGATAATGAGTCTACCCATGAGCTCATACAG
CCTGGGATGTTCATGCTGGATGGAAACAACAACCTGGAAGATGACTCCAGCGTGAGCGAAGACCTCGAAG
TGGACTGGAGCCTGTTTGATGGGTTTGCCGATGGCTTGGGAGTGGCCGAAGCCATCTCCTACGTGGATCC
TCAGTTCCTCACCTACATGGCTCTGGAAGAGCGTCTGGCCCAGGCAATGGAGACGGCCCTGGCACACTTG
GAGTCTCTCGCCGTTGATGTCGAAGTGGCCAACCCACCAGCAAGCAAGGAGAGCATTGATGCCCTTCCTG
AGATCCTGGTCACCGAAGATCATGGTGCAGTGGGCCAGGAAATGTGCTGTCCTATCTGCTGCAGCGAATA
TGTGAAGGGGGAGGTGGCAACTGAGCTACCATGCCACCACTATTTCCACAAGCCCTGCGTGTCCATCTGG
CTTCAGAAGTCTGGCACCTGCCCAGTGTGCCGCTGCATGTTCCCTCCCCCGCTCTAA

Translation (578 aa):
MSHQERIASQRRTTAEVPMHRSTANQSKRSRSPFASTRRRWDDSESSGASLAVESEDYSRYPPREYRASG
SRRGLAYGHIDTVVARDSEEEGAGPVDRLPVRGKAGKFKDDPEKGARSSRFTSVNHDAKEECGKVESPPA
ARCSARRAELSKQNGSSASQISSAEGRAAAKGNNSLERERQNLPARPSRAPVSICGGGENTPKSAEEPVV
RPKVRNVATPNCMKPKVFFDTDDDDDVPHSTSRWRDAADAEEAHAEGLARRGRGEAASSSEPRYAEDQDA
RSEQAKADKVPRRRRTMADPDFWAYTDDYYRYYEEDSDSDKEWMAALRRKYRSREQPQSSSGESWELLPG
KEELERQQAGAGSLASAGSNGSGYPEEVQDPSLQEEEQASLEEGEIPWLRYNENESSSEGDNESTHELIQ
PGMFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHL
ESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
LQKSGTCPVCRCMFPPPL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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