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Report for CCDS4115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4115.1 Public Homo sapiens 5 TRIM36 24 110 108 CCDS HistoryNCBI Gene:55521Re-query CCDS DB by CCDS ID:4115.1Re-query CCDS DB by GeneID:55521See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282369.7 ENSP00000282369.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282369.7Link to Ensembl Protein Viewer:ENSP00000282369.3Re-query CCDS DB by Nucleotide ID:ENST00000282369Re-query CCDS DB by Protein ID:ENSP00000282369
Original member Current member NCBI NM_018700.4 NP_061170.2 Accepted alive Link to Nucleotide Sequence:NM_018700.4Link to Protein Sequence:NP_061170.2Re-query CCDS DB by Nucleotide ID:NM_018700Re-query CCDS DB by Protein ID:NP_061170Link to BLAST:NP_061170.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061170.2 728 Q9NQ86-1 728 100% 0 0

Chromosomal Locations for CCDS 4115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115126503 115126857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115130592 115130889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115133860 115134147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137000 115137124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137363 115137616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115141279 115141374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115144598 115144744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115147069 115147394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115163518 115163752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115179975 115180037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGTCGGAGTCTGGGGAGATGAGTGAATTTGGCTACATCATGGAATTGATAGCTAAAGGCAAGGTTACCA
TTAAGAATATCGAAAGGGAGCTCATTTGCCCAGCATGCAAGGAGCTGTTTACCCACCCATTGATTCTCCC
TTGCCAACATAGTATCTGTCATAAATGTGTAAAAGAACTCCTGCTGACTCTCGATGATTCATTCAACGAT
GTGGGATCAGACAACTCCAATCAAAGCAGTCCTCGACTTCGGCTCCCCTCCCCTAGTATGGATAAAATTG
ACCGAATTAACAGACCAGGCTGGAAGCGCAATTCATTGACCCCGAGGACAACTGTTTTCCCTTGCCCTGG
CTGTGAGCATGATGTGGATCTTGGAGAACGAGGAATCAATGGTCTGTTTCGAAACTTCACTTTGGAAACT
ATTGTGGAAAGATATCGTCAAGCAGCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACCACCAC
CTCAAGAATCCACAAAAAGCTGCATGGACTGTAGTGCAAGTTACTGCAATGAATGCTTCAAAATTCATCA
CCCTTGGGGTACTATAAAAGCTCAACATGAGTATGTTGGTCCAACTACTAACTTCAGACCCAAGATTTTA
ATGTGCCCAGAACATGAAACAGAGAGAATAAACATGTACTGTGAATTATGTAGGAGGCCAGTTTGCCATC
TGTGTAAGTTGGGTGGTAATCATGCCAACCACCGTGTAACCACTATGAGCAGTGCCTACAAAACCTTAAA
GGAAAAGCTTTCAAAGGATATTGATTACCTTATTGGTAAGGAAAGCCAGGTGAAGAGTCAAATATCTGAA
CTAAACTTGTTAATGAAAGAAACAGAGTGTAATGGAGAGAGGGCTAAAGAAGAAGCAATTACACATTTTG
AAAAGCTCTTTGAAGTTCTGGAAGAGAGGAAATCATCTGTTTTGAAAGCAATTGACTCCTCTAAGAAACT
AAGATTAGACAAATTTCAGACTCAAATGGAAGAGTACCAGGGACTTCTAGAGAACAATGGACTTGTGGGA
TATGCTCAAGAAGTGCTAAAGGAGACAGATCAGTCTTGCTTTGTGCAGACAGCAAAGCAGCTCCACCTCA
GAATACAGAAAGCCACAGAATCTTTGAAGAGCTTTAGACCTGCAGCTCAGACTTCTTTTGAAGACTATGT
TGTTAATACCTCTAAACAAACAGAACTTCTTGGAGAATTATCCTTTTTCTCTAGTGGCATAGACGTGCCA
GAGATCAATGAGGAACAGAGCAAAGTTTATAACAATGCCTTGATAAATTGGCACCATCCAGAAAAGGATA
AAGCTGATAGCTATGTTCTTGAATATCGGAAAATCAATAGAGATGATGAAATGTCATGGAATGAGATAGA
AGTGTGTGGAACAAGTAAAATAATTCAAGACTTGGAAAACAGTAGTACCTATGCTTTCAGAGTAAGAGCT
TACAAGGGTTCAATCTGTAGTCCTTGCAGCAGAGAATTGATTCTTCATACTCCTCCAGCTCCAGTTTTCA
GCTTCCTCTTTGATGAAAAATGTGGCTATAATAATGAACACCTCCTGCTGAACTTGAAGAGAGACCGTGT
AGAGAGTAGAGCTGGATTTAATCTTCTGCTTGCTGCAGAACGCATCCAAGTGGGTTATTACACAAGCTTA
GACTACATCATTGGAGATACTGGCATTACAAAAGGAAAACACTTCTGGGCCTTCCGTGTGGAACCATATT
CATACCTGGTAAAAGTGGGAGTTGCTTCTAGCGATAAACTACAAGAATGGCTCCGTTCTCCCCGGGATGC
AGTTAGTCCAAGATATGAGCAAGACAGTGGGCATGACAGTGGAAGTGAGGATGCCTGTTTTGATTCTTCA
CAACCATTTACCTTAGTTACTATAGGCATGCAGAAATTTTTTATACCCAAGTCACCTACTTCTTCTAATG
AACCTGAAAATAGAGTTCTCCCTATGCCAACAAGTATTGGGATTTTCCTTGACTGTGATAAAGGCAAAGT
AGATTTCTATGATATGGATCAGATGAAATGCCTTTATGAACGCCAAGTGGACTGTTCACATACACTGTAT
CCAGCATTTGCATTAATGGGCAGTGGAGGAATTCAGCTTGAAGAACCCATCACAGCAAAATATCTGGAAT
ACCAAGAGGACATGTAG

Translation (728 aa):
MSESGEMSEFGYIMELIAKGKVTIKNIERELICPACKELFTHPLILPCQHSICHKCVKELLLTLDDSFND
VGSDNSNQSSPRLRLPSPSMDKIDRINRPGWKRNSLTPRTTVFPCPGCEHDVDLGERGINGLFRNFTLET
IVERYRQAARAATAIMCDLCKPPPQESTKSCMDCSASYCNECFKIHHPWGTIKAQHEYVGPTTNFRPKIL
MCPEHETERINMYCELCRRPVCHLCKLGGNHANHRVTTMSSAYKTLKEKLSKDIDYLIGKESQVKSQISE
LNLLMKETECNGERAKEEAITHFEKLFEVLEERKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLENNGLVG
YAQEVLKETDQSCFVQTAKQLHLRIQKATESLKSFRPAAQTSFEDYVVNTSKQTELLGELSFFSSGIDVP
EINEEQSKVYNNALINWHHPEKDKADSYVLEYRKINRDDEMSWNEIEVCGTSKIIQDLENSSTYAFRVRA
YKGSICSPCSRELILHTPPAPVFSFLFDEKCGYNNEHLLLNLKRDRVESRAGFNLLLAAERIQVGYYTSL
DYIIGDTGITKGKHFWAFRVEPYSYLVKVGVASSDKLQEWLRSPRDAVSPRYEQDSGHDSGSEDACFDSS
QPFTLVTIGMQKFFIPKSPTSSNEPENRVLPMPTSIGIFLDCDKGKVDFYDMDQMKCLYERQVDCSHTLY
PAFALMGSGGIQLEEPITAKYLEYQEDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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