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Report for CCDS41174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41174.1 Public Mus musculus X Gnl3l 23 108 98 CCDS HistoryNCBI Gene:237107Re-query CCDS DB by CCDS ID:41174.1Re-query CCDS DB by GeneID:237107See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026297.11 ENSMUSP00000026297.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026297.11Link to Ensembl Protein Viewer:ENSMUSP00000026297.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026297Re-query CCDS DB by Protein ID:ENSMUSP00000026297
Original member Current member EBI ENSMUST00000112691.8 ENSMUSP00000108311.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112691.8Link to Ensembl Protein Viewer:ENSMUSP00000108311.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112691Re-query CCDS DB by Protein ID:ENSMUSP00000108311
Original member Current member NCBI NM_001168600.1 NP_001162071.1 Accepted alive Link to Nucleotide Sequence:NM_001168600.1Link to Protein Sequence:NP_001162071.1Re-query CCDS DB by Nucleotide ID:NM_001168600Re-query CCDS DB by Protein ID:NP_001162071Link to BLAST:NP_001162071.1
Original member Current member NCBI NM_198110.2 NP_932778.1 Accepted alive Link to Nucleotide Sequence:NM_198110.2Link to Protein Sequence:NP_932778.1Re-query CCDS DB by Nucleotide ID:NM_198110Re-query CCDS DB by Protein ID:NP_932778Link to BLAST:NP_932778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162071.1 577 Q6PGG6 577 100% 0 0
NP_932778.1 577 Q6PGG6 577 100% 0 0

Chromosomal Locations for CCDS 41174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150986104 150986186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150987839 150988061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150991136 150991263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150993649 150993785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150994011 150994153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150994248 150994422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150995011 150995098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150997186 150997330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150999697 150999803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151000603 151000738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151001038 151001121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151002174 151002290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151003534 151003641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151004245 151004285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151014021 151014039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGATGAAGATTAGACACAAAAACAAAAAACCAGGTAAAGGTTCCAAAGGCTGTAAGAAGCCTGCAAGGC
AAAATGGGAAGAAAGTAACCTCCAGACCATCATCTGCTCCCCAGATTGTTCATGGCAATGACCATGCCAG
TCGCGAGGCCGAATTAAAGAAGAAAAGGGTCGAGGAGATGAGGGAGAAGCAGCAAGTTGCCCGGGAGCAA
GAGAGACAGAGACACAGGACCATGGAGAGCTATTGTCAGGATGTCCTGAAACGTCAGCAGGAATTTGAAC
AAAAGGAGGAAGTTTTGCAGGAATTAAACATGTTTCCTCAGTTGGATGATGAGGCCACAAGGAAGGCCTA
TTACAAGGAATTCCGGAAGGTGGTAGAGTACTCTGATGTGATTCTGGAAGTCCTAGATGCCAGAGACCCA
TTGGGCTGCCGCTGTTTCCAGATGGAGGAGACTGTCCTTCGTGCAGAAGGCAACAAGAAGCTGGTCTTGG
TCTTAAATAAGATAGATCTCGTTCCCAAGGAGATTGTGGAAAAGTGGCTGGAATACCTTCTCAATGAACT
GCCAACTGTGGCTTTCAAGGCCAGCACCCAGCATCATCAGGTCAAAAACTTGACTCGTTGTAAAGTTCCA
GTGGACCAGGCCTCTGAGTCGCTTTTGAAAAGCAGAGCCTGCTTTGGAGCCGAAAATCTCATGAGGGTCC
TGGGGAACTATTGTCGCCTGGGGGAAGTGCGTGGCCACATTCGTGTGGGTGTTGTAGGCCTTCCCAATGT
GGGGAAGAGCAGTCTGATCAATAGCCTGAAGCGCAGCCGTGCTTGTAGTGTGGGAGCTGTTCCTGGTGTC
ACAAAATTCATGCAGGAGGTCTACCTAGACAAGTTTATCAGGCTTCTGGATGCACCAGGCATTGTCCCAG
GACCCAATTCAGAGGTGGGCACCATCCTGCGTAATTGCATCCATGTGCAGAAGCTGGCAGACCCTGTGAC
CCCGGTGGAGACCATCCTTCAGCGCTGCAACCTGGAGGAGATTTCCAGCTACTATGGTGTATCTGGATTC
CAGACGACTGAGCACTTTCTGACTGCAGTGGCCCATCGCTTGGGAAAGAAGAAGAAGGGAGGTGTATATA
GTCAGGAACAGGCTGCCAAAGCTGTGCTGGCTGACTGGGTGAGTGGGAAGATCAGCTTCTATACACTACC
ACCGCCCACTCACACTCTGCCCACCCATCTCAGTGCTGAGATTGTTAAGGAGATGACTGAGGTCTTTGAT
ATAGAAGATACTGAGCACGCCAATGAAGACACCATGGAATGCTTAGCTGTGGGAGAATCCGATGAGCTGT
TGGGTGACATGGACCCACAAGAAATGGAGGTCAGGTGGCTCCATTCTCCACTGGTGAAAATAGCAGATGC
TATTGAAAATAGAAGCACCGTGTATAAGATTGGAAATCTCACTGGGTATTGTACCAAACCAAACCGTAAT
CAGATGGGGTGGCCTAAACGCAATGTGGACCACCATTGCCCCCAAAATAACCGTGTAGTAGAGGTCAGTT
CTGTGGACCGCCGCCCGATGTTGCAGAGGATCCTGGAGACAGACCCACTTCAGCAAGGCCAGGCTCTGGC
ATCTGCCTTGAAGAATAAGAAAAAATTGCAGAAGCGTTCAGATAAAATCGCCACTAAGTTGTCTGACTCC
ATGATGTCCATGCTTGACCTCTCTGGCAACTCCGATGACTGTGCAGGTGACTGA

Translation (577 aa):
MMKIRHKNKKPGKGSKGCKKPARQNGKKVTSRPSSAPQIVHGNDHASREAELKKKRVEEMREKQQVAREQ
ERQRHRTMESYCQDVLKRQQEFEQKEEVLQELNMFPQLDDEATRKAYYKEFRKVVEYSDVILEVLDARDP
LGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEIVEKWLEYLLNELPTVAFKASTQHHQVKNLTRCKVP
VDQASESLLKSRACFGAENLMRVLGNYCRLGEVRGHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGV
TKFMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCIHVQKLADPVTPVETILQRCNLEEISSYYGVSGF
QTTEHFLTAVAHRLGKKKKGGVYSQEQAAKAVLADWVSGKISFYTLPPPTHTLPTHLSAEIVKEMTEVFD
IEDTEHANEDTMECLAVGESDELLGDMDPQEMEVRWLHSPLVKIADAIENRSTVYKIGNLTGYCTKPNRN
QMGWPKRNVDHHCPQNNRVVEVSSVDRRPMLQRILETDPLQQGQALASALKNKKKLQKRSDKIATKLSDS
MMSMLDLSGNSDDCAGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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