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Report for CCDS41179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41179.1 Public Mus musculus X Shroom2 23 108 98 CCDS HistoryNCBI Gene:110380Re-query CCDS DB by CCDS ID:41179.1Re-query CCDS DB by GeneID:110380See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101141.8 ENSMUSP00000098701.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101141.8Link to Ensembl Protein Viewer:ENSMUSP00000098701.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101141Re-query CCDS DB by Protein ID:ENSMUSP00000098701
Original member Current member NCBI NM_172441.3 NP_766029.2 Accepted alive Link to Nucleotide Sequence:NM_172441.3Link to Protein Sequence:NP_766029.2Re-query CCDS DB by Nucleotide ID:NM_172441Re-query CCDS DB by Protein ID:NP_766029Link to BLAST:NP_766029.2

Chromosomal Locations for CCDS 41179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152612528 152612794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152613395 152613667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152617193 152617355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152618901 152619446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152623126 152623335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152657424 152657524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152659264 152661718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152673532 152673663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152695640 152695791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152769286 152769450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4464 nt):
ATGGAGGGCGCCGAGCCCCGTGCACGGCCCGAGCGCCTGGCCGAAGCTGAGGCGCCGGCGACCGACGGCG
TCCGCCTGGTGGAGGTGCAGCTGAGCGGCGGCGCCCCTTGGGGCTTCACCTTGAAGGGCGGCCGCGAGCA
TGGCGAGCCTCTGGTCATCACCAAGATTGAAGAAGGAAGCAAAGCTGCAGCAGTGGACAAGCTACTTGCT
GGAGATGAGATAGTGGCCATTAATGATGTGAGTCTCTCAGGGTTCAGACAAGAAGCAATTTGCCTGGTGA
AAGGCTCCCACAAGACCCTGAAGCTTGTGGTCAAAAGGAAAAGTGATCCAAGTTGGAGGCCCCACTCCTG
GCACGCTACCAAGTACTTTGATGTCCACCCTGAGCCAGCAGCCTCACTGTTTCTGAACACCAGCGGTTCC
CCTTCCTGGAAGAGCCAGCACCAGGCTAGTTCTTCCTCTCATGATTTATCTGGCTCATGGGAGCATACAA
GCCTACAGCGCACTTCTGACCACTTCAGCTCCATGGGCAGCATAGACAGCCTCGACCACAGCTCCCAACT
CTACCCATCTGGACACCTCTCATCTGCCAAGTCCAATAGCAGCATTGACCACCTGGGAGGCCACAGCAAG
CGAGACTCAGCTTACGGCTCCTTTTCCACATGCTCCAGCACCCCTGACCACACCTTGCCCAAGGCTGATG
CCTCTTCCACTGAGAACATTCTCTATAAAGTTGGCCTTTGGGAGGCCTCCAGACCAGGCAGCAGCCGACA
AAGCCAGTCTACAGGTGATCCTCAGGGACTGCAGGACAGGCCATCATGTTTCATACCTAGGGTTCCTGGT
AACAGTAGTAAAAGTCCAAGGCCGGAGGATAATGTTGAACCCAAAATAGCCACTCATGGGAGATCCAATT
TTGGGCCTGTGTGGTATGTTCCTGACAAGAAAAAAGCCCCTTCTCCCCCACCTCTTGGACTTCCTTTGCG
CAGTGATAGCTTTTCTGTGGCAGCCAGGGGCCATGAAAAAGCCCGGGGCCCTCCATTCTCAGACTTGGCC
AGTATGCAGCACTTTATCACCCTGCCCCATGTGCAACCCCGGGGGGACCATAGAATGGAAACTACAGATC
GTCAGTGGAAGCTCACACACCTAAGCAGTGGAAAAGAAATAGGAAATGTGGGTTACCAGTCAGAAGGCCA
CCTGGATTGCCGTTGGCTATGCTCTGATGATAGAGCAGGTAGGCCCTCAGGGCCTCCGGGCAGGCTCCAG
TTCTCCGATGTGCACTTTCTGAAGTCTTACCACGGGAGCCAGCACCAACAGCAGTGCAGTGACGAGAGCC
CAAGGGCCCCCTCATCACCAAGGGAACTGCTTCATATAACTCCTGGTGGCGGTCTGCAAGAGCCTCCTGA
ACCATCTCAGGATGACAACCCTACTCAGGTGAGGTGGCCTGGTTCTGCTCACCAGAAGCTAGATGACAGA
GGGCGGAGCCACTATTTTCCTGGGTCCCTCAGGCAGCCTGTACAGGGGAGTGCCCAGGTTGTGATACCCC
GAGGTGACTATTGGCATTCAGATACAACTCCTGTGGACCTTGAATATCCTCTCTTACGCCCAGTAGGACA
GAGGACCTACCTACAGCAGCATGAGGAGACTCCGGCCTCTCATGAAAAAGAGGGGTATCACCAGCTAAAT
GCAGGGATTGAAGGCTGCTGCTCTGGAATCCAAGAGCCTCCTAGAGCCAGCCGCACTGTGAGAACTGGTC
TGCAGTGTCCTAGCAATGACTTCAAATTAGTGGATGGAGAGAGTGGGAGAATTTCTCGTCAGAGGACACC
CATGCTGCATTCTCTGACCCAAGATGGTACATGGAGACCCGGGAACAGCAAGGATTGTGGAAATGATAAG
CCACCACTGTTTGATGCCCAGGTGGGTAAACCCACACGGAGGAGTGACCGTTTTGCCACAACACTGAGGA
ATGAGATCCAAATGCGTAGAGCAAAGCTGCAGAAGAGCAAAAGTACAGTGACACTAGCTGGAGACAGTGA
AGCTGAAGATTGTGCTGGAGACTGGAGAGCTGATGTGGGGGCTGTCCCAGAAGGTTCCTTCCCCAGCACC
TATAAAGAGCACCTGAAGGAGGCCCAGACACGTGTTCTGAAGGCCACCTCTTTCCAACGCCGAGATTTAG
ATCCCACCCCAGCAGATCAGTATTCAGGACCATCAGAACACAGGACTTTTGACCACAGTGCCTCATCTTC
TTTATCTTCTTTCCCTGGGGAGCCAGACTCTGCCCCACGCTTCTGTGAGACAGGTCTGGCCAAGGCACCC
TCTTCTGGAGTTGGTGTACCCCACGTTCTTCGAATTGGAGGCCGGAAACGGTTCACAGCAGAGCAGAAAC
TAAAGTCCTATTCTGAGCCAGAGAAAATAAATGAAGTGGGGCTCTCAGGGGACCACCGTCCTCATCCTAC
TGTCAGGACACCTGAGGATACAGTGGGTACATTTGCTGACAGGTGGAAGTTTTTTGAGGAAACAAGCAAA
TCTCTTCTCCAGAAGGCAGGCCATAGGCAAGTTCACTGTGGGCTCCCTAGAGAGAAGGCTGAGAGGCCAC
AGACAGGGCACCATGAATGTGAGAGTACAGAGCCCTGGTTCCAGAAGAGGTCACTGGCCACCTCCTGCGG
AGAGATCCTCAGTGATAGAAAAGTAGAAAAGGCCTCAGAGAAATTGAACCCACCCAGAAGGCTTGGAACC
TTCGCAGAATATCAAGCATCTTGGAAGGAACAGAAGAAACCTCTGGAAGCCAGGAGTTCTGGACGATACC
ATTCAGCAGATGATATTCTGGATGCTGGTCTAGATCAGCAGCAGAGGCCACAGTACATTCATGAGCGGTC
TCGTTCATCACCGTCCACAGATCACTACTCACAGGAAGTGCCTGTTGAACCAAACAGGCAGGCAGAGGAC
TCTGGTGACCACAAAGAAGCAATTCTCTGTACACTACAAGCTGAGGAGGGATGCTCTGCTCCAAGCTCCT
CTGTGCTCAGCAGTGCCCAGCCGCAAGACAGCCAGCATGTGAATGAAGACACAACTTTCCCTCAACCAGA
AACCCAGCTCTCTTCCAAGTGTCAACACCTACAGACGTCAGCCATGGAAACTTCTCGCTCCCCTTCGCCT
CAGTTTGCCCCACAGAAGCTGACAGATAAACCTCCCCTGCTTATCCATGAAGACAACTCAGCAAGAATCG
AGCGGGTGATGGACAACAACACCACTGTGAAGATGGTGCCCATAAAAATTGTGCACTCAGAAAGCCAGCC
CGAGAAGGAGAGTCGTCAGAGTCTCGCGTGCCCAGCTGAGCTGCCCCCACTGCCCAGTGGGCTGGAGAGG
GACCAGATCAAGACACTGAGTACATCAGAGCAATGCTACTCCCGCTTCTGTGTGTACACACGACAGGAGG
TGGAAGCTCCTCATAGAGCCCGCCCTCCAGAGCCCCGGCCACCCAGCACGCCTGCACCTCCTGTCAGAGA
TAGCTGTTCCTCCCCTCCCTCACTCAACTATGGGAAGGCCAAGGAGAAAACCATGGATGACTTGAAGTCT
GAAGAATTAGCCAGGGAGATTGTGGGAAAGGACAAGTCTTTGGCTGACATCCTGGACCCCAGTGTGAAGA
TCAAAACTACCATGGATCTGATGGAGGGAATTTTTCCCAAAGATGAGTACCTCCTAGAGGAAGCTCAGCA
GCGGAGAAAGCTGCTCCCCAAAGTCCCCTTACCCAGAGTCACAGAGGACAAGAAACAGGACCCAGGTATG
CCAGGGGTTGTGTCCTTGGCCACCAATTCTACCTATTACAGCACATCAGCCCCCAAAGCAGAGCTTCTTA
TCAAGATGAAGGACCTGCAGGAGCCTGAAGAGTATTCAGCAGGTGACTTGGATCATGACCTTTCTGTTAA
GAAGCAAGAGCTCATTGACAGTATCAGCCGCAAGCTGCAGGTGCTCCGGGAAGCACGTGAGAGCCTGCTG
GAAGACATCCAAGCCAACAATGCTCTTGGGGATGAGGTGGAAGCCATTGTGAAAGATGTCTGCAAGCCCA
ATGAGTTTGACAAGTTCCGGATGTTCATTGGAGACCTGGACAAAGTGGTGAACCTCCTGCTGTCACTGTC
AGGACGCCTGGCCCGTGTGGAAAATGCCCTTAATAATTTAGATGACAATCCTTCTCCTGGAGATCGGCAG
TCACTGTTGGAGAAACAGAGAGTCCTAACTCAGCAGCACGAGGATGCCAAGGAGCTTAAAGAGAACCTGG
ACCGCCGTGAGCGCATTGTGTTCGACATCCTGGCTACCTACCTCAGCGAGGAGAACCTGGCTGACTATGA
GCACTTCGTGAAGATGAAGTCAGCTCTCATCATTGAGCAGCGAGAGCTGGAAGATAAAATCCACCTGGGT
GAAGAGCAGCTCAAGTGTTTGTTTGACAGCCTACAGCCTGAGAGAAGCAAATGA

Translation (1487 aa):
MEGAEPRARPERLAEAEAPATDGVRLVEVQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLA
GDEIVAINDVSLSGFRQEAICLVKGSHKTLKLVVKRKSDPSWRPHSWHATKYFDVHPEPAASLFLNTSGS
PSWKSQHQASSSSHDLSGSWEHTSLQRTSDHFSSMGSIDSLDHSSQLYPSGHLSSAKSNSSIDHLGGHSK
RDSAYGSFSTCSSTPDHTLPKADASSTENILYKVGLWEASRPGSSRQSQSTGDPQGLQDRPSCFIPRVPG
NSSKSPRPEDNVEPKIATHGRSNFGPVWYVPDKKKAPSPPPLGLPLRSDSFSVAARGHEKARGPPFSDLA
SMQHFITLPHVQPRGDHRMETTDRQWKLTHLSSGKEIGNVGYQSEGHLDCRWLCSDDRAGRPSGPPGRLQ
FSDVHFLKSYHGSQHQQQCSDESPRAPSSPRELLHITPGGGLQEPPEPSQDDNPTQVRWPGSAHQKLDDR
GRSHYFPGSLRQPVQGSAQVVIPRGDYWHSDTTPVDLEYPLLRPVGQRTYLQQHEETPASHEKEGYHQLN
AGIEGCCSGIQEPPRASRTVRTGLQCPSNDFKLVDGESGRISRQRTPMLHSLTQDGTWRPGNSKDCGNDK
PPLFDAQVGKPTRRSDRFATTLRNEIQMRRAKLQKSKSTVTLAGDSEAEDCAGDWRADVGAVPEGSFPST
YKEHLKEAQTRVLKATSFQRRDLDPTPADQYSGPSEHRTFDHSASSSLSSFPGEPDSAPRFCETGLAKAP
SSGVGVPHVLRIGGRKRFTAEQKLKSYSEPEKINEVGLSGDHRPHPTVRTPEDTVGTFADRWKFFEETSK
SLLQKAGHRQVHCGLPREKAERPQTGHHECESTEPWFQKRSLATSCGEILSDRKVEKASEKLNPPRRLGT
FAEYQASWKEQKKPLEARSSGRYHSADDILDAGLDQQQRPQYIHERSRSSPSTDHYSQEVPVEPNRQAED
SGDHKEAILCTLQAEEGCSAPSSSVLSSAQPQDSQHVNEDTTFPQPETQLSSKCQHLQTSAMETSRSPSP
QFAPQKLTDKPPLLIHEDNSARIERVMDNNTTVKMVPIKIVHSESQPEKESRQSLACPAELPPLPSGLER
DQIKTLSTSEQCYSRFCVYTRQEVEAPHRARPPEPRPPSTPAPPVRDSCSSPPSLNYGKAKEKTMDDLKS
EELAREIVGKDKSLADILDPSVKIKTTMDLMEGIFPKDEYLLEEAQQRRKLLPKVPLPRVTEDKKQDPGM
PGVVSLATNSTYYSTSAPKAELLIKMKDLQEPEEYSAGDLDHDLSVKKQELIDSISRKLQVLREARESLL
EDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDNPSPGDRQ
SLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATYLSEENLADYEHFVKMKSALIIEQRELEDKIHLG
EEQLKCLFDSLQPERSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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