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Report for CCDS41286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41286.1 Public Homo sapiens 1 UBXN11 24 110 108 CCDS HistoryNCBI Gene:91544Re-query CCDS DB by CCDS ID:41286.1Re-query CCDS DB by GeneID:91544See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357089.8 ENSP00000349601.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357089.8Link to Ensembl Protein Viewer:ENSP00000349601.4Re-query CCDS DB by Nucleotide ID:ENST00000357089Re-query CCDS DB by Protein ID:ENSP00000349601
Original member Current member EBI ENST00000374217.7 ENSP00000363334.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374217.7Link to Ensembl Protein Viewer:ENSP00000363334.2Re-query CCDS DB by Nucleotide ID:ENST00000374217Re-query CCDS DB by Protein ID:ENSP00000363334
Original member Current member NCBI NM_001389559.1 NP_001376488.1 Accepted alive Link to Nucleotide Sequence:NM_001389559.1Link to Protein Sequence:NP_001376488.1Re-query CCDS DB by Nucleotide ID:NM_001389559Re-query CCDS DB by Protein ID:NP_001376488Link to BLAST:NP_001376488.1
Original member Current member NCBI NM_145345.3 NP_663320.2 Accepted alive Link to Nucleotide Sequence:NM_145345.3Link to Protein Sequence:NP_663320.2Re-query CCDS DB by Nucleotide ID:NM_145345Re-query CCDS DB by Protein ID:NP_663320Link to BLAST:NP_663320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001376488.1 487 Q5T124-2 487 100% 0 0
NP_663320.2 487 Q5T124-2 487 100% 0 0

Chromosomal Locations for CCDS 41286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26282299 26282569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282649 26282789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282864 26282937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284142 26284245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284362 26284482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285464 26285541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285823 26286037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26294205 26294331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26296919 26296995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26297427 26297481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26297962 26298062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26301694 26301722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26302813 26302883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGAGCTCACCTTTGGCCTCCCTTAGCAAGACCCGAAAAGTGCCCCTGCCCTCGGAGCCTATGAATCCTG
GGAGGCGAGGAATCCGCATCTATGGAGATGTCCCTGCATCCCATGACTCGGAGCTGATGGCCTTCATGAC
GAGGAAGTTGTGGGACCTGGAGCAGCAGGTGAAGGCCCAGACTGATGAGATACTGTCCAAGGATCAGAAG
ATAGCGGCCCTAGAGGACCTGGTGCAGACCCTCCGGCCACACCCAGCCGAGGCAACCCTGCAGCGGCAGG
AGGAACTGGAGACGATGTGTGTGCAGCTGCAGCGGCAGGTCAGGGAGATGGAGCGGTTCCTCAGTGACTA
TGGCCTGCAGTGGGTGGGCGAGCCCATGGACCAGGAGGACTCAGAGAGCAAGACAGTCTCAGAGCATGGC
GAGAGGGACTGGATGACAGCCAAGAAGTTCTGGAAGCCAGGGGACTCATTGGCGCCCCCTGAGGTGGACT
TTGACAGGCTGCTGGCCAGCCTGCAGGATCTTAGTGAGCTGGTGGTAGAGGGTGACACCCAAGTGACACC
AGTGCCCGGCGGGGCACGGCTGCGTACCCTCGAGCCCATCCCGCTGAAGCTCTACCGGAATGGCATCATG
ATGTTCGACGGGCCCTTCCAGCCCTTCTACGATCCCTCCACACAGCGCTGCCTCCGAGACATATTGGATG
GCTTCTTTCCCTCAGAGCTCCAGCGACTGTACCCCAATGGGGTCCCCTTTAAGGTGAGTGACTTGCGCAA
TCAGGTCTACCTGGAGGATGGACTGGACCCCTTCCCAGGCGAGGGCCGTGTGGTGGGCAGGCAGCTGATG
CACAAGGCCTTGGACAGGGTGGAGGAGCACCCAGGCTCCAGGATGACTGCTGAGAAATTTCTGAACAGGC
TCCCCAAGTTTGTGATCCGGCAAGGCGAGGTGATTGACATCCGGGGCCCCATCAGGGACACCTTGCAGAA
CTGCTGCCCATTGCCTGCCCGGATCCAGGAGATTGTGGTGGAGACGCCCACCTTGGCCGCTGAGCGAGAG
AGGAGCCAGGAGTCACCCAACACGCCGGCACCCCCGCTCTCCATGCTGCGCATCAAGTCTGAGAATGGGG
AACAGGCCTTCCTACTGATGATGCAGCCTGACAACACCATTGGGGACGTGCGAGCTCTGCTAGCGCAGGC
CAGGGTCATGGATGCCTCTGCCTTTGAGATCTTCAGCACATTCCCGCCCACCCTCTACCAGGACGATACA
CTCACGCTGCAGGCTGCAGGCCTTGTGCCCAAAGCAGCACTGCTGCTGCGGGCACGCCGAGCCCCGAAGT
CCAGCCTGAAATTCAGTCCTGGTCCCTGTCCCGGTCCCGGTCCCGGCCCCAGTCCCGGTCCCGGTCCCGG
CCCCAGTCCCGGTCCCGGTCCCGGCCCCAGTCCCTGTCCTGGACCCAGTCCCAGCCCCCAATAA

Translation (487 aa):
MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDVPASHDSELMAFMTRKLWDLEQQVKAQTDEILSKDQK
IAALEDLVQTLRPHPAEATLQRQEELETMCVQLQRQVREMERFLSDYGLQWVGEPMDQEDSESKTVSEHG
ERDWMTAKKFWKPGDSLAPPEVDFDRLLASLQDLSELVVEGDTQVTPVPGGARLRTLEPIPLKLYRNGIM
MFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNGVPFKVSDLRNQVYLEDGLDPFPGEGRVVGRQLM
HKALDRVEEHPGSRMTAEKFLNRLPKFVIRQGEVIDIRGPIRDTLQNCCPLPARIQEIVVETPTLAAERE
RSQESPNTPAPPLSMLRIKSENGEQAFLLMMQPDNTIGDVRALLAQARVMDASAFEIFSTFPPTLYQDDT
LTLQAAGLVPKAALLLRARRAPKSSLKFSPGPCPGPGPGPSPGPGPGPSPGPGPGPSPCPGPSPSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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