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Report for CCDS41450.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41450.2 Public Homo sapiens 1 RO60 24 110 108 CCDS HistoryNCBI Gene:6738Re-query CCDS DB by CCDS ID:41450.2Re-query CCDS DB by GeneID:6738See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41450.1
The coding region has been updated to represent an alternative splicing pattern, resulting in longer N- and C-termini that are more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41450.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367445.7 ENSP00000356415.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367445.7Link to Ensembl Protein Viewer:ENSP00000356415.3Re-query CCDS DB by Nucleotide ID:ENST00000367445Re-query CCDS DB by Protein ID:ENSP00000356415
Original member Current member NCBI NM_001042370.2 NP_001035829.2 Accepted alive Link to Nucleotide Sequence:NM_001042370.2Link to Protein Sequence:NP_001035829.2Re-query CCDS DB by Nucleotide ID:NM_001042370Re-query CCDS DB by Protein ID:NP_001035829Link to BLAST:NP_001035829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035829.2 534 P10155-4 534 100% 0 0

Chromosomal Locations for CCDS 41450.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 193069055 193069634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193075820 193076040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193076501 193076647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193076913 193077050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193081364 193081480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082186 193082299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082562 193082708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193084579 193084698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193091651 193091671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGAGGAATCTGTAAACCAAATGCAGCCACTGAATGAGAAGCAGATAGCCAATTCTCAGGATGGATATG
TATGGCAAGTCACTGACATGAATCGACTACACCGGTTCTTATGTTTCGGTTCTGAAGGTGGGACTTATTA
TATCAAAGAACAGAAGTTGGGCCTTGAAAATGCTGAAGCTTTAATTAGATTGATTGAAGATGGCAGAGGA
TGTGAAGTGATACAAGAAATAAAGTCATTTAGTCAAGAAGGCAGAACCACAAAGCAAGAGCCTATGCTCT
TTGCACTTGCCATTTGTTCCCAGTGCTCCGACATAAGCACAAAACAAGCAGCATTTAAAGCTGTTTCTGA
AGTTTGTCGCATTCCTACCCATCTCTTTACTTTTATCCAGTTTAAGAAAGATCTGAAGGAAAGCATGAAA
TGTGGCATGTGGGGTCGTGCCCTCCGGAAGGCTATAGCGGACTGGTACAATGAGAAAGGTGGCATGGCCC
TTGCTCTGGCAGTTACAAAATATAAACAGAGAAATGGCTGGTCTCACAAAGATCTATTAAGATTGTCACA
TCTTAAACCTTCCAGTGAAGGACTTGCAATTGTGACCAAATATATTACAAAGGGCTGGAAAGAAGTTCAT
GAATTGTATAAAGAAAAAGCACTCTCTGTGGAGACTGAAAAATTATTAAAGTATCTGGAGGCTGTAGAGA
AAGTGAAGCGCACAAGAGATGAGCTAGAAGTCATTCATCTAATAGAAGAACATAGATTAGTTAGAGAACA
TCTTTTAACAAATCACTTAAAGTCTAAAGAGGTATGGAAGGCTTTGTTACAAGAAATGCCGCTTACTGCA
TTACTAAGGAATCTAGGAAAGATGACTGCTAATTCAGTACTTGAACCAGGAAATTCAGAAGTATCTTTAG
TATGTGAAAAACTGTGTAATGAAAAACTATTAAAAAAGGCTCGTATACATCCATTTCATATTTTGATCGC
ATTAGAAACTTACAAGACAGGTCATGGTCTCAGAGGGAAACTGAAGTGGCGCCCTGATGAAGAAATTTTG
AAAGCATTGGATGCTGCTTTTTATAAAACATTTAAGACAGTTGAACCAACTGGAAAACGTTTCTTACTAG
CTGTTGATGTCAGTGCTTCTATGAACCAAAGAGTTTTGGGTAGTATACTCAACGCTAGTACAGTTGCTGC
AGCAATGTGCATGGTTGTCACACGAACAGAAAAAGATTCTTATGTAGTTGCTTTTTCCGATGAAATGGTA
CCATGTCCAGTGACTACAGATATGACCTTACAACAGGTTTTAATGGCTATGAGTCAGATCCCAGCAGGTG
GAACTGATTGCTCTCTTCCAATGATCTGGGCTCAGAAGACAAACACACCTGCTGATGTCTTCATTGTATT
CACTGATAATGAGACCTTTGCTGGAGGTGTCCATCCTGCTATTGCTCTGAGGGAGTATCGAAAGAAAATG
GATATTCCAGCTAAATTGATTGTTTGTGGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGATA
GAGGCATGTTGGATATGTGCGGCTTTGATACTGGAGCTCTGGATCCTTGCAAAATACCCTACTAA

Translation (534 aa):
MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRG
CEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQFKKDLKESMK
CGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEGLAIVTKYITKGWKEVH
ELYKEKALSVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTA
LLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEIL
KALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKM
DIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDPCKIPY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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