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Report for CCDS41569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41569.1 Public Homo sapiens 10 HSPA12A 24 110 108 CCDS HistoryNCBI Gene:259217Re-query CCDS DB by CCDS ID:41569.1Re-query CCDS DB by GeneID:259217See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369209.8 ENSP00000358211.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369209.8Link to Ensembl Protein Viewer:ENSP00000358211.3Re-query CCDS DB by Nucleotide ID:ENST00000369209Re-query CCDS DB by Protein ID:ENSP00000358211
Original member Current member NCBI NM_025015.3 NP_079291.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025015.3Link to Protein Sequence:NP_079291.2Re-query CCDS DB by Nucleotide ID:NM_025015Re-query CCDS DB by Protein ID:NP_079291Link to BLAST:NP_079291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079291.2 675 O43301 675 100% 0 0

Chromosomal Locations for CCDS 41569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116674781 116675418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116676399 116676502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116679503 116679761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116681152 116681256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116681791 116681877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116683791 116683962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116692351 116692467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116698635 116698739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116700943 116701129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116705151 116705278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116707200 116707285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116742430 116742469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGCGGACAAGGAGGCCGGCGGCAGCGACGGGCCCCGAGAAACGGCTCCCACATCTGCATATTCATCTC
CAGCCCGGAGTCTTGGGGACACAGGAATAACGCCTCTGTCCCCCTCCCATATTGTGAACGACACTGACTC
CAACGTCTCAGAACAGCAGTCATTTCTCGTGGTGGTGGCCGTCGACTTTGGGACCACATCCAGTGGCTAT
GCCTACAGCTTCACCAAGGAGCCGGAATGCATCCATGTGATGAGGCGATGGGAGGGAGGTGACCCTGGTG
TGTCCAATCAGAAGACTCCAACCACCATCTTGCTGACTCCCGAGAGGAAGTTCCACAGCTTCGGGTATGC
CGCCAGGGACTTTTACCATGACCTGGATCCCAATGAGGCCAAGCAGTGGCTGTACCTGGAGAAGTTCAAG
ATGAAGCTGCACACCACTGGGGACCTCACCATGGATACAGACCTGACGGCAGCAAATGGCAAGAAAGTCA
AAGCCCTTGAAATCTTTGCTTATGCCCTGCAGTACTTTAAGGAGCAGGCGCTGAAGGAGCTGAGTGACCA
GGCGGGTTCGGAGTTCGAGAACTCTGATGTCAGATGGGTCATCACGGTGCCTGCCATCTGGAAGCAGCCG
GCCAAGCAGTTCATGAGACAAGCTGCCTACCAGGCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCA
TCATTGCCTTGGAGCCTGAGGCAGCCTCTATCTACTGCCGAAAGCTGCGGCTACACCAGATGATTGAGCT
GAGCAGCAAGGCAGCCGTCAATGGGTACAGCGGCAGTGACACAGTAGGAGCTGGGTTTACACAGGCTAAG
GAACACATACGGCGTAATCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCCG
AGCTGGAGGAAGGTGATAAGTATGTGGTTGTGGACAGTGGCGGTGGCACCGTAGACCTGACAGTCCATCA
GATCCGGTTACCGGAGGGACACCTTAAGGAACTGTATAAAGCAACAGGCGGACCCTATGGATCTTTAGGA
GTAGATTATGAGTTCGAAAAACTTCTGTATAAAATATTTGGAGAGGATTTTATTGAACAATTCAAAATCA
AACGCCCTGCAGCCTGGGTTGACTTAATGATTGCGTTTGAGTCTCGCAAAAGGGCGGCTGCCCCAGACAG
AACTAACCCGCTGAACATCACCCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGCGGGCACAGT
GTGGAGCACGCCTTGCGGAAAAGCAATGTGGATTTTGTGAAGTGGTCCTCGCAGGGGATGCTGCGGATGA
GTCCAGATGCCATGAACGCCCTTTTTAAGCCGACCATCGATAGCATCATTGAGCATCTCCGGGACCTGTT
TCAGAAGCCCGAGGTGTCCACCGTCAAGTTCCTCTTTCTGGTGGGCGGCTTTGCCGAGGCGCCCCTGCTG
CAGCAGGCGGTGCAGGCTGCTTTTGGGGACCAGTGCCGGATCATCATCCCCCAGGACGTGGGCCTCACCA
TCCTCAAGGGTGCCGTCCTCTTTGGCCTGGACCCCGCGGTCATCAAGGTGCGCCGGTCGCCGCTCACCTA
CGGGGTAGGCGTGCTGAACCGCTACGTGGAGGGCAAGCACCCGCCTGAGAAGCTGCTGGTGAAGGATGGC
ACTCGGTGGTGCACCGACGTCTTTGACAAGTTCATCTCTGCCGACCAGTCTGTGGCTCTGGGTGAGCTGG
TCAAGCGTAGCTACACCCCGGCCAAGCCCTCCCAGCTGGTCATTGTCATCAACATCTACAGCTCTGAGCA
CGACAACGTCAGCTTCATCACTGATCCCGGGGTGAAGAAGTGTGGCACGCTCCGCCTGGATCTCACAGGG
ACCAGTGGCACTGCGGTGCCCGCCCGGAGGGAGATCCAGACCCTTATGCAGTTCGGGGACACCGAGATCA
AAGCCACAGCCATTGATATAGCCACTTCGAAGAGTGTCAAAGTTGGGATCGACTTCTTAAATTACTAA

Translation (675 aa):
MADKEAGGSDGPRETAPTSAYSSPARSLGDTGITPLSPSHIVNDTDSNVSEQQSFLVVVAVDFGTTSSGY
AYSFTKEPECIHVMRRWEGGDPGVSNQKTPTTILLTPERKFHSFGYAARDFYHDLDPNEAKQWLYLEKFK
MKLHTTGDLTMDTDLTAANGKKVKALEIFAYALQYFKEQALKELSDQAGSEFENSDVRWVITVPAIWKQP
AKQFMRQAAYQAGLASPENSEQLIIALEPEAASIYCRKLRLHQMIELSSKAAVNGYSGSDTVGAGFTQAK
EHIRRNRQSRTFLVENVIGEIWSELEEGDKYVVVDSGGGTVDLTVHQIRLPEGHLKELYKATGGPYGSLG
VDYEFEKLLYKIFGEDFIEQFKIKRPAAWVDLMIAFESRKRAAAPDRTNPLNITLPFSFIDYYKKFRGHS
VEHALRKSNVDFVKWSSQGMLRMSPDAMNALFKPTIDSIIEHLRDLFQKPEVSTVKFLFLVGGFAEAPLL
QQAVQAAFGDQCRIIIPQDVGLTILKGAVLFGLDPAVIKVRRSPLTYGVGVLNRYVEGKHPPEKLLVKDG
TRWCTDVFDKFISADQSVALGELVKRSYTPAKPSQLVIVINIYSSEHDNVSFITDPGVKKCGTLRLDLTG
TSGTAVPARREIQTLMQFGDTEIKATAIDIATSKSVKVGIDFLNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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