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Report for CCDS41580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41580.1 Public Homo sapiens 10 ADGRA1 24 110 108 CCDS HistoryNCBI Gene:84435Re-query CCDS DB by CCDS ID:41580.1Re-query CCDS DB by GeneID:84435See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392607.8 ENSP00000376384.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392607.8Link to Ensembl Protein Viewer:ENSP00000376384.3Re-query CCDS DB by Nucleotide ID:ENST00000392607Re-query CCDS DB by Protein ID:ENSP00000376384
Original member Current member NCBI NM_001083909.3 NP_001077378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083909.3Link to Protein Sequence:NP_001077378.1Re-query CCDS DB by Nucleotide ID:NM_001083909Re-query CCDS DB by Protein ID:NP_001077378Link to BLAST:NP_001077378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077378.1 560 Q86SQ6-3 560 100% 0 0

Chromosomal Locations for CCDS 41580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 133088910 133088912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133096974 133097101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133098640 133098763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133102697 133102842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133127233 133127331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133128329 133129511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGATCTGAAGACAGTGCTCTCCCTGCCCCGCTACCCAGGGGAGTTCCTGCACCCCGTGGTGTACGCGT
GCACGGCCGTCATGCTGCTCTGCCTCCTGGCCTCCTTCGTCACCTACATCGTGCACCAGAGCGCCATCCG
CATCAGCCGCAAGGGCCGGCACACGCTCCTGAATTTCTGCTTCCACGCGGCCCTGACCTTCACTGTGTTC
GCCGGCGGCATCAATCGCACCAAGTACCCCATCCTGTGCCAGGCGGTGGGCATCGTGCTGCACTATTCTA
CACTGTCCACCATGCTGTGGATAGGAGTGACCGCCAGGAACATCTACAAGCAGGTGACCAAGAAGGCCCC
TCTGTGCCTGGACACAGACCAGCCACCGTACCCCAGGCAGCCCCTGCTCAGGTTTTACCTCGTCAGCGGA
GGGGTCCCCTTTATCATCTGTGGGGTCACGGCTGCCACGAACATCAGGAATTACGGGACAGAGGACGAGG
ACACGGCGTACTGCTGGATGGCCTGGGAGCCCAGCCTGGGCGCCTTCTACGGCCCAGCCGCCATCATCAC
CCTGGTCACCTGTGTGTACTTCCTGGGCACCTACGTGCAGCTGCGGCGCCACCCAGGGCGCAGGTACGAG
CTGCGCACACAGCCCGAGGAGCAGCGGCGGCTGGCGACACCCGAGGGCGGCCGTGGGATCCGGCCAGGCA
CCCCACCCGCACACGATGCCCCCGGCGCCTCCGTGCTGCAGAACGAGCACTCATTCCAGGCACAGCTGCG
CGCCGCCGCCTTCACGCTGTTCCTGTTCACGGCCACGTGGGCCTTCGGGGCGCTGGCGGTGTCACAGGGC
CACTTCCTGGACATGGTCTTCAGCTGCCTGTACGGCGCCTTCTGCGTGACCCTGGGACTCTTCGTGCTCA
TCCACCACTGCGCCAAGCGTGAGGACGTGTGGCAGTGCTGGTGGGCATGCTGCCCGCCCCGCAAGGACGC
CCACCCCGCACTTGACGCCAACGGGGCCGCGCTGGGCCGCGCCGCCTGCCTGCACTCGCCGGGACTGGGC
CAGCCACGGGGCTTCGCGCACCCACCGGGCCCCTGCAAGATGACCAACCTGCAGGCCGCGCAGGGCCACG
CCAGTTGCCTGTCACCGGCCACCCCGTGCTGCGCCAAGATGCACTGCGAGCCACTGACGGCGGACGAGGC
GCACGTGCACCTGCAGGAGGAGGGCGCCTTCGGGCACGACCCCCACCTGCACGGGTGCCTTCAGGGCAGA
ACTAAGCCGCCCTACTTTAGCCGGCACCCAGCAGAGGAGCCCGAGTACGCCTACCACATCCCATCCAGCC
TGGATGGCAGCCCCCGCAGCTCGCGCACAGACAGCCCCCCCAGCTCTCTGGATGGCCCGGCGGGGACACA
CACGCTGGCCTGCTGCACCCAGGGCGACCCCTTCCCCATGGTCACCCAGCCCGAGGGCAGTGATGGGAGC
CCTGCCCTCTACAGCTGCCCCACGCAGCCGGGCAGGGAGGCAGCGCTCGGGCCCGGCCACTTGGAGATGC
TGCGGAGGACACAGTCCCTGCCCTTTGGTGGCCCCAGCCAGAACGGGCTGCCCAAGGGTAAATTGCTAGA
AGGCCTGCCGTTTGGCACCGACGGGACCGGCAACATCCGAACGGGACCCTGGAAAAACGAAACTACTGTG
TAG

Translation (560 aa):
MDLKTVLSLPRYPGEFLHPVVYACTAVMLLCLLASFVTYIVHQSAIRISRKGRHTLLNFCFHAALTFTVF
AGGINRTKYPILCQAVGIVLHYSTLSTMLWIGVTARNIYKQVTKKAPLCLDTDQPPYPRQPLLRFYLVSG
GVPFIICGVTAATNIRNYGTEDEDTAYCWMAWEPSLGAFYGPAAIITLVTCVYFLGTYVQLRRHPGRRYE
LRTQPEEQRRLATPEGGRGIRPGTPPAHDAPGASVLQNEHSFQAQLRAAAFTLFLFTATWAFGALAVSQG
HFLDMVFSCLYGAFCVTLGLFVLIHHCAKREDVWQCWWACCPPRKDAHPALDANGAALGRAACLHSPGLG
QPRGFAHPPGPCKMTNLQAAQGHASCLSPATPCCAKMHCEPLTADEAHVHLQEEGAFGHDPHLHGCLQGR
TKPPYFSRHPAEEPEYAYHIPSSLDGSPRSSRTDSPPSSLDGPAGTHTLACCTQGDPFPMVTQPEGSDGS
PALYSCPTQPGREAALGPGHLEMLRRTQSLPFGGPSQNGLPKGKLLEGLPFGTDGTGNIRTGPWKNETTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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