NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41682.1 Public Homo sapiens 11 KRTAP5-7 24 110 108 CCDS HistoryNCBI Gene:440050Re-query CCDS DB by CCDS ID:41682.1Re-query CCDS DB by GeneID:440050See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398536.6 ENSP00000417330.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398536.6Link to Ensembl Protein Viewer:ENSP00000417330.2Re-query CCDS DB by Nucleotide ID:ENST00000398536Re-query CCDS DB by Protein ID:ENSP00000417330
Original member Current member NCBI NM_001012503.2 NP_001012521.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012503.2Link to Protein Sequence:NP_001012521.1Re-query CCDS DB by Nucleotide ID:NM_001012503Re-query CCDS DB by Protein ID:NP_001012521Link to BLAST:NP_001012521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012521.1 165 Q6L8G8 165 100% 0 0

Chromosomal Locations for CCDS 41682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 71527301 71527798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGGCTGCTGTGGCTGTTCCGAAGGCTGTGGCTCCGGCTGTGGGGGCTGTGGCTCCGGCTGTGGGGGCT
GTGGCTCTGGCTGTGGGGGATGTGGCTCCAGCTGCTGTGTGCCCGTCTGCTGCTGCAAGCCCGTGTGCTG
CTGTGTGCCAGCCTGTTCCTGCTCCAGCTGTGGCTCCTGTGGGGGCTCCAAGGGAGGCTGTGGCTCCTGT
GGGGGCTCCAAGGGGGGCTGTGGCTCTTGTGGGGGTTCTAAGGGGGGCTGTGGTTCTTGTGGCTGCTCCC
AGTGCAGCTGCTATAAGCCCTGCTGCTGCTCCTCAGGCTGTGGGTCATCCTGCTGCCAGTCCAGCTGCTG
TAAGCCCTGCTGCTGCCAGTCCAGCTGCTGTAAGCCCTGCTGCTGTTCCTCAGGCTGTGGGTCATCCTGC
TGCCAGTCCAGTTGCTGCAATCCCTGCTGCTCCCAGTCTAGCTGCTGTGTCCCCGTGTGCTGCCAGTGTA
AGATCTGA

Translation (165 aa):
MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSCGGSKGGCGSC
GGSKGGCGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSC
CQSSCCNPCCSQSSCCVPVCCQCKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH