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Report for CCDS41878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41878.1 Public Homo sapiens 13 PDS5B 24 110 108 CCDS HistoryNCBI Gene:23047Re-query CCDS DB by CCDS ID:41878.1Re-query CCDS DB by GeneID:23047See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315596.15 ENSP00000313851.10 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315596.15Link to Ensembl Protein Viewer:ENSP00000313851.10Re-query CCDS DB by Nucleotide ID:ENST00000315596Re-query CCDS DB by Protein ID:ENSP00000313851
Original member Current member NCBI NM_015032.4 NP_055847.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015032.4Link to Protein Sequence:NP_055847.1Re-query CCDS DB by Nucleotide ID:NM_015032Re-query CCDS DB by Protein ID:NP_055847Link to BLAST:NP_055847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055847.1 1447 Q9NTI5-1 1447 100% 0 0

Chromosomal Locations for CCDS 41878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32648773 32648880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32651804 32652007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32658239 32658325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32658434 32658531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32659154 32659280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32667764 32667844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32673216 32673356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32675844 32675959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32678835 32678929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32683878 32684023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32687134 32687285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32688456 32688569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32694223 32694304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32696854 32696902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32699730 32699869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32701323 32701438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32706934 32707039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32709946 32710106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32732101 32732224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32735172 32735330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32741080 32741148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32742591 32742727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32745977 32746100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32753332 32753536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32755842 32755956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32758087 32758219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32758534 32758653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32759628 32759690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32760575 32760720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32764489 32764594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32770121 32770560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32770654 32770761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32773189 32773324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32775017 32775052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4344 nt):
ATGGCTCATTCAAAGACTAGGACCAATGATGGAAAAATTACATATCCGCCTGGGGTCAAGGAAATATCAG
ATAAAATATCTAAAGAGGAGATGGTGAGACGATTAAAGATGGTTGTGAAAACTTTTATGGATATGGACCA
GGACTCTGAAGAAGAAAAGGAGCTTTATTTAAACCTAGCTTTACATCTTGCTTCAGATTTTTTTCTCAAG
CATCCTGATAAAGATGTTCGCTTACTGGTAGCCTGCTGCCTTGCTGATATTTTCAGGATTTATGCTCCTG
AAGCTCCTTACACATCCCCTGATAAACTAAAGGATATATTTATGTTTATAACAAGACAGTTGAAGGGGCT
AGAGGATACAAAGAGCCCACAATTCAATAGGTATTTTTATTTACTTGAGAACATTGCTTGGGTCAAGTCA
TATAACATATGCTTTGAGTTAGAAGATAGCAATGAAATTTTCACCCAGCTATACAGAACCTTATTTTCAG
TTATAAACAATGGCCACAATCAGAAAGTCCATATGCACATGGTAGACCTTATGAGCTCTATTATTTGTGA
AGGTGATACAGTGTCTCAGGAGCTTTTGGATACGGTTTTAGTAAATCTGGTACCTGCTCATAAGAATTTA
AACAAGCAAGCATATGATTTGGCAAAGGCTTTACTGAAGAGGACAGCTCAAGCTATTGAGCCATATATTA
CCAATTTTTTTAATCAGGTTCTGATGCTTGGGAAAACATCTATCAGCGATTTGTCAGAGCATGTCTTTGA
CTTAATTTTGGAGCTCTACAATATTGATAGTCATTTGCTGCTCTCTGTTTTACCCCAGCTTGAATTTAAA
TTAAAGAGCAATGATAATGAGGAGCGCCTACAAGTTGTTAAACTACTGGCAAAAATGTTTGGGGCAAAGG
ATTCAGAATTGGCTTCTCAAAACAAGCCACTTTGGCAGTGCTACTTGGGCAGGTTTAATGATATCCATGT
ACCAATCCGCCTGGAATGTGTGAAATTTGCTAGCCATTGTCTCATGAACCATCCTGATTTAGCAAAAGAC
TTAACAGAGTATCTTAAAGTGAGGTCACATGACCCTGAGGAAGCTATTAGACATGATGTTATTGTGTCAA
TAGTTACAGCTGCTAAAAAGGATATTCTTCTGGTCAATGATCACTTACTTAATTTTGTGAGAGAGAGAAC
ATTAGACAAACGATGGAGAGTACGCAAAGAAGCCATGATGGGACTTGCCCAAATTTATAAGAAATATGCT
TTACAGTCAGCAGCTGGAAAAGATGCTGCAAAACAGATAGCATGGATCAAAGACAAATTGCTACATATAT
ATTATCAAAATAGTATTGATGATCGACTACTTGTTGAACGGATCTTTGCTCAATACATGGTTCCTCACAA
TTTAGAAACTACAGAACGGATGAAATGCTTATATTACTTGTATGCCACACTGGATTTAAATGCTGTGAAA
GCATTGAATGAAATGTGGAAATGTCAAAATCTGCTCCGACATCAAGTAAAGGATTTGCTTGACTTGATTA
AGCAACCCAAAACAGATGCCAGTGTCAAGGCCATATTTTCAAAAGTGATGGTTATTACAAGAAATTTACC
TGATCCTGGTAAGGCTCAGGATTTCATGAAGAAATTCACACAGGTGTTAGAAGATGATGAGAAAATAAGA
AAGCAGTTAGAAGTACTTGTTAGTCCAACATGCTCCTGCAAGCAGGCTGAAGGTTGTGTGCGTGAAATAA
CTAAGAAGTTGGGCAACCCCAAACAGCCTACAAATCCTTTCCTGGAAATGATCAAGTTTCTCTTGGAGAG
GATAGCACCTGTGCACATAGATACCGAATCTATCAGTGCTCTTATTAAACAAGTGAACAAATCAATAGAT
GGAACAGCAGATGATGAAGATGAGGGTGTTCCAACTGATCAAGCCATCAGAGCAGGTCTTGAACTGCTTA
AGGTACTCTCATTTACACATCCCATCTCATTTCATTCTGCTGAAACATTTGAATCATTACTGGCTTGTCT
GAAAATGGATGATGAAAAAGTAGCAGAAGCTGCACTACAAATTTTCAAAAACACAGGAAGCAAAATTGAA
GAGGATTTTCCACACATCAGATCAGCCTTGCTTCCTGTTTTACATCACAAATCTAAAAAAGGACCCCCCC
GTCAAGCCAAATATGCCATTCATTGTATCCATGCGATATTTTCTAGTAAAGAGACCCAGTTTGCACAGAT
ATTTGAGCCTCTGCATAAGAGCCTAGATCCAAGCAACCTGGAACATCTCATAACACCATTGGTTACTATT
GGTCATATTGCTCTCCTTGCACCTGATCAATTTGCTGCTCCTTTGAAATCTTTGGTAGCTACTTTCATTG
TGAAAGATCTTCTCATGAATGATCGGCTTCCAGGGAAAAAGACAACTAAACTTTGGGTTCCAGATGAAGA
AGTATCTCCTGAGACAATGGTCAAAATTCAGGCTATTAAAATGATGGTTCGATGGCTACTTGGAATGAAA
AATAATCACAGTAAATCAGGAACTTCTACCTTAAGATTGCTAACAACAATATTGCATAGTGATGGAGACT
TGACAGAACAGGGGAAAATTAGTAAACCAGATATGTCACGTCTGAGACTTGCTGCTGGGAGTGCTATTGT
GAAGCTGGCACAAGAACCCTGTTACCATGAAATCATCACATTAGAACAATATCAGCTATGTGCATTAGCT
ATCAACGATGAATGCTATCAAGTAAGACAAGTGTTTGCCCAGAAACTTCACAAAGGCCTTTCCCGTTTAC
GGCTTCCACTTGAGTATATGGCAATCTGTGCCCTTTGTGCAAAAGATCCTGTAAAGGAGAGAAGAGCTCA
TGCTAGGCAATGTTTGGTGAAAAATATAAATGTAAGGCGGGAGTATCTGAAGCAGCATGCAGCTGTTAGT
GAAAAATTATTGTCTCTTCTACCAGAGTATGTTGTTCCATATACAATTCACCTTTTGGCACATGACCCAG
ATTATGTCAAAGTACAGGATATTGAACAACTTAAAGATGTTAAAGAATGTCTTTGGTTTGTTCTGGAAAT
ATTAATGGCTAAAAATGAAAATAACAGTCACGCTTTTATCAGAAAGATGGTAGAAAATATTAAACAAACA
AAAGATGCCCAAGGACCAGATGATGCAAAAATGAATGAAAAACTGTACACTGTGTGTGATGTTGCCATGA
ATATCATCATGTCAAAGAGTACTACATACAGTTTGGAATCTCCTAAAGACCCGGTACTACCAGCTCGTTT
CTTCACTCAACCTGACAAGAATTTCAGTAACACCAAAAATTATCTGCCTCCTGAAATGAAATCATTTTTC
ACTCCTGGAAAACCTAAAACAACCAATGTTCTAGGAGCTGTTAACAAGCCACTTTCATCAGCAGGCAAGC
AATCTCAGACCAAATCATCACGAATGGAAACTGTAAGCAATGCAAGCAGCAGCTCAAATCCAAGCTCTCC
TGGAAGAATAAAGGGGAGGCTTGATAGTTCTGAAATGGATCACAGTGAAAATGAAGATTACACAATGTCT
TCACCTTTGCCGGGGAAAAAAAGTGACAAGAGAGACGACTCTGATCTTGTAAGGTCTGAATTGGAGAAGC
CTAGAGGCAGGAAAAAAACGCCCGTCACAGAACAGGAGGAGAAATTAGGTATGGATGACTTGACTAAGTT
GGTACAGGAACAGAAACCTAAAGGCAGTCAGCGAAGTCGGAAAAGAGGCCATACGGCTTCAGAATCTGAT
GAACAGCAGTGGCCTGAGGAAAAGAGGCTCAAAGAAGATATATTAGAAAATGAAGATGAACAGAATAGTC
CGCCAAAAAAGGGTAAAAGAGGCCGACCACCAAAACCTCTTGGTGGAGGTACACCAAAAGAAGAGCCAAC
AATGAAAACTTCTAAAAAAGGAAGCAAAAAAAAATCTGGACCTCCAGCACCAGAGGAGGAGGAAGAAGAA
GAAAGACAAAGTGGAAATACGGAACAGAAGTCCAAAAGCAAACAGCACCGAGTGTCAAGGAGAGCACAGC
AGAGAGCAGAATCTCCTGAATCTAGTGCAATTGAATCCACACAGTCCACACCACAGAAAGGACGAGGAAG
ACCATCAAAAACGCCATCACCATCACAACCAAAAAAAAATGTCCGTGTAGGACGCTCCAAACAAGCAGCT
ACTAAGGAAAATGATTCAAGTGAAGAAGTAGATGTGTTTCAGGGTAGCTCTCCTGTCGATGATATTCCAC
AGGAAGAAACAGAGGAGGAGGAAGTTTCTACAGTAAATGTACGGCGGCGAAGTGCTAAAAGGGAACGGCG
ATGA

Translation (1447 aa):
MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALHLASDFFLK
HPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKS
YNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNL
NKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFK
LKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKD
LTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYA
LQSAAGKDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVK
ALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVLEDDEKIR
KQLEVLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSID
GTADDEDEGVPTDQAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIE
EDFPHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQFAQIFEPLHKSLDPSNLEHLITPLVTI
GHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMK
NNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALA
INDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREYLKQHAAVS
EKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEILMAKNENNSHAFIRKMVENIKQT
KDAQGPDDAKMNEKLYTVCDVAMNIIMSKSTTYSLESPKDPVLPARFFTQPDKNFSNTKNYLPPEMKSFF
TPGKPKTTNVLGAVNKPLSSAGKQSQTKSSRMETVSNASSSSNPSSPGRIKGRLDSSEMDHSENEDYTMS
SPLPGKKSDKRDDSDLVRSELEKPRGRKKTPVTEQEEKLGMDDLTKLVQEQKPKGSQRSRKRGHTASESD
EQQWPEEKRLKEDILENEDEQNSPPKKGKRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPEEEEEE
ERQSGNTEQKSKSKQHRVSRRAQQRAESPESSAIESTQSTPQKGRGRPSKTPSPSQPKKNVRVGRSKQAA
TKENDSSEEVDVFQGSSPVDDIPQEETEEEEVSTVNVRRRSAKRERR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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