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Report for CCDS42040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42040.1 Public Homo sapiens 15 PRTG 24 110 108 CCDS HistoryNCBI Gene:283659Re-query CCDS DB by CCDS ID:42040.1Re-query CCDS DB by GeneID:283659See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389286.9 ENSP00000373937.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389286.9Link to Ensembl Protein Viewer:ENSP00000373937.4Re-query CCDS DB by Nucleotide ID:ENST00000389286Re-query CCDS DB by Protein ID:ENSP00000373937
Original member Current member NCBI NM_173814.6 NP_776175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173814.6Link to Protein Sequence:NP_776175.2Re-query CCDS DB by Nucleotide ID:NM_173814Re-query CCDS DB by Protein ID:NP_776175Link to BLAST:NP_776175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776175.2 1150 Q2VWP7 1150 100% 0 0

Chromosomal Locations for CCDS 42040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55620012 55620266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55620663 55620767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55624342 55624507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55627008 55627128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55628822 55629004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55637170 55637340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55638549 55638676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55639642 55639828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55641113 55641208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55672445 55672633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55673371 55673676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55675519 55675683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55677797 55678044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55679286 55679445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55680054 55680212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55680491 55680628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55682364 55682497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55683787 55683931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55740382 55740684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55742838 55742931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3453 nt):
ATGGCGCCTCCTCTGCGACCCCTCGCCCGGCTGCGACCGCCGGGGATGCTGCTCCGCGCGCTCCTGCTCC
TGCTGCTGCTCAGTCCTTTGCCAGGAGTGTGGTGCTTTAGCGAACTGTCTTTTGTAAAAGAACCACAGGA
TGTAACTGTCACAAGAAAGGACCCAGTCGTTTTAGATTGCCAGGCTCACGGAGAAGTTCCTATTAAGGTC
ACATGGTTGAAAAATGGAGCAAAAATGTCTGAAAATAAACGGATCGAGGTTCTTTCTAACGGCTCTTTAT
ACATCAGTGAGGTGGAAGGCAGGCGAGGAGAGCAGTCCGATGAAGGATTTTATCAGTGCTTGGCAATGAA
CAAATATGGAGCCATTCTTAGTCAAAAAGCTCATCTTGCCTTATCAACTATTTCTGCATTTGAAGTCCAG
CCAATTTCCACTGAGGTCCACGAAGGTGGAGTTGCTCGATTTGCATGCAAGATTTCATCCCACCCTCCTG
CAGTCATAACATGGGAGTTCAATCGGACAACTCTACCTATGACTATGGACAGGATAACTGCCCTACCAAC
AGGAGTATTGCAGATCTATGATGTCAGCCAAAGGGATTCTGGAAATTATCGTTGTATTGCTGCCACTGTA
GCCCACCGACGTAAAAGTATGGAGGCCTCGCTAACTGTGATTCCAGCTAAGGAGTCAAAATCCTTCCACA
CACCAACAATTATAGCAGGTCCACAGAACATAACAACATCTCTTCATCAGACTGTAGTTTTGGAATGCAT
GGCCACAGGAAATCCCAAACCAATCATTTCTTGGAGCCGCCTTGATCACAAATCCATTGATGTCTTTAAT
ACTCGGGTACTTGGAAATGGTAATCTCATGATATCTGATGTCAGGCTACAACATGCTGGAGTATATGTTT
GTCGGGCCACTACCCCTGGCACACGCAACTTTACAGTTGCTATGGCAACTTTAACTGTATTAGCTCCTCC
TTCATTTGTTGAATGGCCAGAAAGTTTAACAAGGCCTCGAGCTGGCACTGCTCGATTTGTGTGTCAGGCA
GAAGGAATCCCCTCTCCCAAGATGTCATGGTTGAAAAATGGAAGGAAGATACATTCGAATGGTAGAATTA
AAATGTACAACAGTAAATTGGTAATTAACCAGATTATTCCTGAAGATGATGCTATTTATCAGTGCATGGC
TGAGAATAGCCAAGGATCTATTTTATCTAGAGCCAGACTGACTGTAGTGATGTCAGAAGACAGACCCAGT
GCTCCCTATAATGTACATGCTGAAACCATGTCAAGCTCAGCCATTCTTTTAGCCTGGGAGAGGCCACTTT
ATAATTCAGACAAAGTCATTGCCTATTCTGTACACTACATGAAAGCAGAAGGTTTAAATAATGAAGAGTA
TCAAGTAGTCATCGGAAATGACACAACTCATTATATTATTGATGACTTAGAGCCTGCCAGCAATTATACT
TTCTACATTGTAGCATATATGCCAATGGGAGCCAGCCAGATGTCTGACCATGTGACACAGAATACTCTAG
AGGATGTTCCCCTGAGACCTCCTGAAATTAGTTTGACAAGTCGAAGTCCCACTGATATTCTCATCTCCTG
GCTGCCAATCCCAGCCAAATATCGGCGGGGCCAAGTGGTGCTGTATCGCTTGTCTTTCCGCCTAAGTACT
GAGAATTCAATCCAAGTTCTGGAGCTCCCGGGGACCACGCATGAGTACCTTTTGGAAGGCCTGAAACCTG
ACAGTGTCTACCTGGTTCGGATTACTGCTGCCACCAGAGTGGGGCTGGGAGAGTCATCAGTATGGACTTC
ACATAGGACGCCCAAAGCTACAAGCGTGAAAGCCCCTAAGTCTCCAGAGTTGCATTTGGAGCCTCTGAAC
TGTACCACCATTTCTGTGAGGTGGCAGCAAGATGTAGAGGACACAGCTGCTATTCAGGGCTACAAGCTGT
ACTACAAGGAAGAAGGGCAGCAGGAGAATGGGCCCATTTTCTTGGATACCAAGGACCTACTCTATACTCT
CAGTGGCTTAGACCCCAGAAGAAAATATCATGTGAGACTCCTGGCTTACAACAACATAGACGATGGCTAT
CAGGCAGATCAGACTGTCAGCACTCCAGGATGCGTGTCTGTTCGTGATCGCATGGTCCCTCCTCCACCAC
CACCCCACCATCTCTATGCGAAGGCTAACACCTCATCTTCCATCTTCCTGCACTGGAGGAGGCCTGCATT
CACCGCTGCACAAATCATTAACTACACCATCCGCTGTAATCCTGTTGGCCTGCAGAATGCTTCTTTGGTT
CTGTACCTTCAAACATCAGAAACTCACATGTTGGTTCAAGGTCTAGAACCAAACACCAAATACGAATTTG
CCGTTCGATTACATGTGGATCAGCTTTCCAGTCCTTGGAGCCCTGTAGTCTACCATTCTACTCTTCCAGA
AGCACCAGCAGGCCCACCAGTTGGAGTAAAAGTGACATTAATAGAGGATGACACTGCCCTGGTTTCTTGG
AAACCCCCTGATGGCCCAGAAACAGTTGTGACCCGCTATACTATCTTATATGCATCTAGGAAGGCCTGGA
TTGCAGGAGAGTGGCAGGTCTTACACCGTGAAGGGGCAATAACCATGGCTTTGCTAGAAAACTTGGTAGC
AGGAAATGTGTACATTGTCAAGATATCTGCATCCAATGAGGTGGGAGAAGGACCCTTTTCAAATTCTGTG
GAGCTGGCAGTACTTCCAAAGGAAACCTCTGAATCAAATCAGAGGCCCAAGCGTTTAGATTCTGCTGATG
CCAAAGTTTATTCAGGATATTACCATCTGGACCAAAAATCAATGACTGGCATTGCTGTAGGTGTTGGCAT
AGCCTTGACCTGCATCCTCATCTGTGTTCTCATCTTGATATACCGAAGTAAAGCCAGGAAATCATCTGCT
TCCAAGACGGCACAGAATGGAACTCAACAGTTACCTCGTACCAGTGCCTCCTTAGCTAGTGGAAATGAGG
TAGGAAAGAACCTGGAAGGAGCTGTAGGAAATGAAGAATCTTTAATGCCAATGATCATGCCAAACAGCTT
CATTGATGCAAAGGGAGGAACTGACCTGATAATTAATAGCTATGGTCCTATAATTAAAAACAACTCTAAG
AAAAAGTGGTTTTTTTTCCAAGACTCAAAGAAGATACAAGTTGAGCAGCCTCAAAGAAGATTTACTCCAG
CGGTCTGCTTTTACCAGCCAGGCACCACTGTATTAATCAGTGATGAAGACTCCCCTAGCTCCCCAGGTCA
GACAACCAGCTTCTCAAGACCCTTTGGTGTTGCAGCTGATACAGAACATTCAGCAAATAGTGAAGGCAGC
CATGAGACTGGGGATTCTGGGCGGTTTTCTCATGAGTCCAACGATGAGATACATCTGTCCTCAGTTATAA
GTACCACACCCCCCAACCTCTGA

Translation (1150 aa):
MAPPLRPLARLRPPGMLLRALLLLLLLSPLPGVWCFSELSFVKEPQDVTVTRKDPVVLDCQAHGEVPIKV
TWLKNGAKMSENKRIEVLSNGSLYISEVEGRRGEQSDEGFYQCLAMNKYGAILSQKAHLALSTISAFEVQ
PISTEVHEGGVARFACKISSHPPAVITWEFNRTTLPMTMDRITALPTGVLQIYDVSQRDSGNYRCIAATV
AHRRKSMEASLTVIPAKESKSFHTPTIIAGPQNITTSLHQTVVLECMATGNPKPIISWSRLDHKSIDVFN
TRVLGNGNLMISDVRLQHAGVYVCRATTPGTRNFTVAMATLTVLAPPSFVEWPESLTRPRAGTARFVCQA
EGIPSPKMSWLKNGRKIHSNGRIKMYNSKLVINQIIPEDDAIYQCMAENSQGSILSRARLTVVMSEDRPS
APYNVHAETMSSSAILLAWERPLYNSDKVIAYSVHYMKAEGLNNEEYQVVIGNDTTHYIIDDLEPASNYT
FYIVAYMPMGASQMSDHVTQNTLEDVPLRPPEISLTSRSPTDILISWLPIPAKYRRGQVVLYRLSFRLST
ENSIQVLELPGTTHEYLLEGLKPDSVYLVRITAATRVGLGESSVWTSHRTPKATSVKAPKSPELHLEPLN
CTTISVRWQQDVEDTAAIQGYKLYYKEEGQQENGPIFLDTKDLLYTLSGLDPRRKYHVRLLAYNNIDDGY
QADQTVSTPGCVSVRDRMVPPPPPPHHLYAKANTSSSIFLHWRRPAFTAAQIINYTIRCNPVGLQNASLV
LYLQTSETHMLVQGLEPNTKYEFAVRLHVDQLSSPWSPVVYHSTLPEAPAGPPVGVKVTLIEDDTALVSW
KPPDGPETVVTRYTILYASRKAWIAGEWQVLHREGAITMALLENLVAGNVYIVKISASNEVGEGPFSNSV
ELAVLPKETSESNQRPKRLDSADAKVYSGYYHLDQKSMTGIAVGVGIALTCILICVLILIYRSKARKSSA
SKTAQNGTQQLPRTSASLASGNEVGKNLEGAVGNEESLMPMIMPNSFIDAKGGTDLIINSYGPIIKNNSK
KKWFFFQDSKKIQVEQPQRRFTPAVCFYQPGTTVLISDEDSPSSPGQTTSFSRPFGVAADTEHSANSEGS
HETGDSGRFSHESNDEIHLSSVISTTPPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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