NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42420.1 Public Homo sapiens 18 CABYR 24 110 108 CCDS HistoryNCBI Gene:26256Re-query CCDS DB by CCDS ID:42420.1Re-query CCDS DB by GeneID:26256See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399496.8 ENSP00000382419.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399496.8Link to Ensembl Protein Viewer:ENSP00000382419.3Re-query CCDS DB by Nucleotide ID:ENST00000399496Re-query CCDS DB by Protein ID:ENSP00000382419
Original member Current member EBI ENST00000399499.5 ENSP00000382421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399499.5Link to Ensembl Protein Viewer:ENSP00000382421.1Re-query CCDS DB by Nucleotide ID:ENST00000399499Re-query CCDS DB by Protein ID:ENSP00000382421
Original member Current member NCBI NM_138644.3 NP_619585.1 Accepted alive Link to Nucleotide Sequence:NM_138644.3Link to Protein Sequence:NP_619585.1Re-query CCDS DB by Nucleotide ID:NM_138644Re-query CCDS DB by Protein ID:NP_619585Link to BLAST:NP_619585.1
Original member Current member NCBI NM_153769.3 NP_722453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153769.3Link to Protein Sequence:NP_722453.1Re-query CCDS DB by Nucleotide ID:NM_153769Re-query CCDS DB by Protein ID:NP_722453Link to BLAST:NP_722453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619585.1 379 O75952-3 379 100% 0 0
NP_722453.1 379 O75952-3 379 100% 0 0

Chromosomal Locations for CCDS 42420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24143115 24143259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24143360 24143413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24155701 24156042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24159472 24160069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24161516 24161516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGATTTCTTCAAAGCCCAGACTTGTCGTACCCTATGGCCTCAAGACTCTGCTCGAGGGAATTAGCAGAG
CTGTTCTCAAAACCAACCCATCAAACATCAACCAGTTTGCAGCAGCTTATTTTCAAGAACTTACTATGTA
TAGAGGGAATACTACTATGGATATAAAAGATCTGGTTAAACAATTTCATCAGATTAAAGTAGAGAAATGG
TCAGAAGGAACGACACCACAGAAGAAATTAGAATGTTTAAAAGAACCAGGAAAAACATCTGTAGAATCTA
AAGTACCTACCCAGATGGAAAAATCTACAGACACAGACGAGGACAATGTAACCAGAACAGAATATAGTGA
CAAAACCACCCAGTTTCCATCAGTTTATGCTGTGCCAGGCACTGAGCAAACGGAAGCAGTTGGTGGTCTT
TCTTCCAAACCAGCCACCCCTAAGACTACTACCCCACCCTCATCACCACCTCCAACAGCTGTCTCACCAG
AGTTTGCCTACGTCCCAGCTGACCCAGCTCAGCTTGCTGCTCAGATGTTAGCAATGGCAACAAGTGAACG
AGGACAACCACCACCATGTTCTAACATGTGGACCCTTTATTGTCTAACTGATAAGAATCAACAAGGTCAC
CCATCACCGCCACCTGCACCTGGGCCTTTTCCCCAAGCAACCCTCTATTTACCTAATCCTAAGGATCCAC
AGTTTCAGCAGCATCCACCAAAAGTCACTTTTCCAACTTATGTGATGGGCGACACCAAGAAGACCAGTGC
CCCACCTTTTATCTTAGTAGGCTCAAATGTTCAGGAAGCACAGGGATGGAAACCTCTTCCTGGACATGCT
GTCGTTTCACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTGCTGTTCCTGCAGATGAGA
AATACCAGAAACATACCCTAAGTCCCCAGAATGCTAATCCTCCAAGTGGACAAGATGTCCCCAGGCCAAA
AAGCCCTGTTTTCCTTTCTGTTGCTTTCCCAGTAGAAGATGTAGCTAAAAAAAGTTCAGGATCTGGTGAC
AAATGTGCTCCCTTTGGAAGTTACGGTATTGCTGGGGAGGTAACCGTGACTACTGCTCACAAACGTCGCA
AAGCAGAAACTGAAAACTGA

Translation (379 aa):
MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVKQFHQIKVEKW
SEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAVPGTEQTEAVGGL
SSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERGQPPPCSNMWTLYCLTDKNQQGH
PSPPPAPGPFPQATLYLPNPKDPQFQQHPPKVTFPTYVMGDTKKTSAPPFILVGSNVQEAQGWKPLPGHA
VVSQSDVLRYVAMQVPIAVPADEKYQKHTLSPQNANPPSGQDVPRPKSPVFLSVAFPVEDVAKKSSGSGD
KCAPFGSYGIAGEVTVTTAHKRRKAETEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH