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Report for CCDS42532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42532.1 Public Homo sapiens 19 ZNF253 24 110 108 CCDS HistoryNCBI Gene:56242Re-query CCDS DB by CCDS ID:42532.1Re-query CCDS DB by GeneID:56242See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589717.2 ENSP00000468720.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000589717.2Link to Ensembl Protein Viewer:ENSP00000468720.1Re-query CCDS DB by Nucleotide ID:ENST00000589717Re-query CCDS DB by Protein ID:ENSP00000468720
Original member Current member NCBI NM_021047.3 NP_066385.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021047.3Link to Protein Sequence:NP_066385.2Re-query CCDS DB by Nucleotide ID:NM_021047Re-query CCDS DB by Protein ID:NP_066385Link to BLAST:NP_066385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066385.2 499 O75346-1 499 100% 0 0

Chromosomal Locations for CCDS 42532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19865997 19865999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19878481 19878607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19880051 19880146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19891474 19892747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGGACCATTGCAATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTGGACACTG
CA
CAGCGGAATTTATATAGGGATGTGATGTTAGAGAACTACAGAAACTTGGTCTTCCTTGGTATTGTTGT
C
TCTAAGCCAGACCTGGTTACCTGTCTGGAGCAAGGAAAAAAACCTTTAACTATGGAAAGACATGAGATG
ATT
GCCAAACCCCCAGTTATGAGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGAACATACAAAATTCTT
TC
CAAATAGGGATGCTGAGAAGATATGAAGAATGCAGACATGACAATTTACAGTTAAAAAAAGGCTGTAA
A
AGCGTGGGTGAGCATAAGGTGCACAAAGGAGGTTATAATGGACTTAACCAATGTTTGACAACTACCCAG
AAA
GAAATATTTCAATGTGATAAATATGGAAAAGTCTTTCATAAGTTTTCAAATTCAAACACATATAAGA
CA
AGACATACTGGAATAAATCTTTTCAAATGTATAATATGTGGCAAAGCTTTTAAACGGTCCTCAACCCT
T
ACTACACATAAGAAAATTCATACTGGAGAGAAACCTTACAGATGTGAAGAATGTGGCAAAGCTTTTAAC
CAA
TCTGCAAACCTTACTACACATAAGAGAATTCATACCGGAGAGAAACCCTACAGATGTGAAGAATGTG
GC
AAAGCCTTTAAGCAGTCCTCAAACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAA
A
TGTGAAGAATGTGGCAAAGCCTTCAACCGATCCACAGACCTTACTACACATAAGATAGTTCATACTGGA
GAG
AAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAAGCACCCCTCACACGTTACCACACATAAGA
AA
ATTCATACTAGAGGGAAACCCTACAACTGTGAAGAATGTGGCAAATCCTTTAAGCACTGCTCTAACCT
T
ACTATACATAAGAGAATTCATACAGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTCAC
CTA
TCCTCACACCTTACTACACATAAGATACTTCATACTGGAGAGAAACCCTACAGATGTAGAGAATGTG
GC
AAAGCTTTTAACCATTCCACAACCCTTTTTTCACATGAGAAAATTCATACTGGAGAGAAACCCTACAA
A
TGTGATGAATGTGGCAAAACCTTTACCTGGCCCTCAATCCTCTCCAAACATAAAAGAACTCATACTGGA
GAG
AAACCCTACAAATGTGAAGAATGTGGCAAATCCTTTACTGCATCCTCAACTCTAACTACACATAAGA
GA
ATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGGCAAAGCTTTTAACTGGTCCTCAGACCT
T
AATAAACATAAGAAAATTCATATTGAACGAAAACCCTACATAGTGAAGAATGTGACAGATCTTTTAAAT
GTT
CCTCCACTTTTAATTAGCATAAGATAA


Translation (499 aa):
MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRDVMLENYRNLVFLGIVVSKPDLVTCLEQGKKPLTMERHEM
I
AKPP
VMSSHFAQDLWPENIQNSFQIGMLRRYEECRHDNLQLKKGCKSVGEHKVHKGGYNGLNQCLTTTQ
K
EIFQCDKYGKVFHKFSNSNTYKTRHTGINLFKCIICGKAFKRSSTLTTHKKIHTGEKPYRCEECGKAFN
Q
SANLTTHKRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTHKIVHTG
E
KPYKCEECGKAFKHPSHVTTHKKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAFH
L
SSHLTTHKILHTGEKPYRCRECGKAFNHSTTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTG
E
KPYKCEECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAFNWSSDLNKHKKIHIERKPYIVKNVTDLLN
V
PPLLISIR




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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