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Report for CCDS4261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4261.1 Public Homo sapiens 5 PCDHGC3 24 110 108 CCDS HistoryNCBI Gene:5098Re-query CCDS DB by CCDS ID:4261.1Re-query CCDS DB by GeneID:5098See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308177.5 ENSP00000312070.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308177.5Link to Ensembl Protein Viewer:ENSP00000312070.3Re-query CCDS DB by Nucleotide ID:ENST00000308177Re-query CCDS DB by Protein ID:ENSP00000312070
Original member Current member NCBI NM_002588.4 NP_002579.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002588.4Link to Protein Sequence:NP_002579.2Re-query CCDS DB by Nucleotide ID:NM_002588Re-query CCDS DB by Protein ID:NP_002579Link to BLAST:NP_002579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002579.2 934 Q9UN70-1 934 100% 0 0

Chromosomal Locations for CCDS 4261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141476117 141478546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGTCCCAGAGGCCTGGAGGAGCGGACTGGTAAGCACCGGGAGGGTAGTGGGAGTTTTGCTTCTGCTTG
GTGCCTTGAACAAGGCTTCCACGGTCATTCACTATGAGATCCCGGAGGAAAGAGAGAAGGGTTTCGCTGT
GGGCAACGTGGTCGCGAACCTTGGTTTGGATCTCGGTAGCCTCTCAGCCCGCAGGTTCCGGGTGGTGTCT
GGAGCTAGCCGAAGATTCTTTGAGGTGAACCGGGAGACCGGAGAGATGTTTGTGAACGACCGTCTGGATC
GAGAGGAGCTGTGTGGGACACTGCCCTCTTGCACTGTAACTCTGGAGTTGGTAGTGGAGAACCCGCTGGA
GCTGTTCAGCGTGGAAGTGGTGATCCAGGACATCAACGACAACAATCCTGCTTTCCCTACCCAGGAAATG
AAATTGGAGATTAGCGAGGCCGTGGCTCCGGGGACGCGCTTTCCGCTCGAGAGCGCGCACGATCCCGATG
TGGGAAGCAACTCTTTACAAACCTATGAGCTGAGCCGAAATGAATACTTTGCGCTTCGCGTGCAGACGCG
GGAGGACAGCACCAAGTACGCGGAGCTGGTGTTGGAGCGCGCCCTGGACCGAGAACGGGAGCCTAGTCTC
CAGTTAGTGCTGACGGCGTTGGACGGAGGGACCCCAGCTCTCTCCGCCAGCCTGCCTATTCACATCAAGG
TGCTGGACGCGAATGACAATGCGCCTGTCTTCAACCAGTCCTTGTACCGGGCGCGCGTCCTGGAGGATGC
ACCCTCCGGCACGCGCGTGGTACAAGTCCTTGCAACGGATCTGGATGAAGGCCCCAACGGTGAAATTATT
TACTCCTTCGGCAGCCACAACCGCGCCGGCGTGCGGCAACTATTCGCCTTAGACCTTGTAACCGGGATGC
TGACAATCAAGGGTCGGCTGGACTTCGAGGACACCAAACTCCATGAGATTTACATCCAGGCCAAAGACAA
GGGCGCCAATCCCGAAGGAGCACATTGCAAAGTGTTGGTGGAGGTTGTGGATGTGAATGACAACGCCCCG
GAGATCACAGTCACCTCCGTGTACAGCCCAGTACCCGAGGATGCCCCTCTGGGGACTGTCATCGCTTTGC
TCAGTGTGACTGACCTGGATGCTGGCGAGAACGGGCTGGTGACCTGCGAAGTTCCACCGGGTCTCCCTTT
CAGCCTTACTTCTTCCCTCAAGAATTACTTCACTTTGAAAACCAGTGCAGACCTGGATCGGGAGACTGTG
CCAGAATACAACCTCAGCATCACCGCCCGAGACGCCGGAACCCCTTCCCTCTCAGCCCTTACAATAGTGC
GTGTTCAAGTGTCCGACATCAATGACAACCCTCCACAATCTTCTCAATCTTCCTACGACGTTTACATTGA
AGAAAACAACCTCCCCGGGGCTCCAATACTAAACCTAAGTGTCTGGGACCCCGACGCCCCGCAGAATGCT
CGGCTTTCTTTCTTTCTCTTGGAGCAAGGAGCTGAAACCGGGCTAGTGGGTCGCTATTTCACAATAAATC
GTGACAATGGCATAGTGTCATCCTTAGTGCCCCTAGACTATGAGGATCGGCGGGAATTTGAATTAACAGC
TCATATCAGCGATGGGGGCACCCCGGTCCTAGCCACCAACATCAGCGTGAACATATTTGTCACTGATCGC
AATGACAATGCCCCCCAGGTCCTATATCCTCGGCCAGGTGGGAGCTCGGTGGAGATGCTGCCTCGAGGTA
CCTCAGCTGGCCACCTAGTGTCACGGGTGGTAGGCTGGGACGCGGATGCAGGGCACAATGCCTGGCTCTC
CTACAGTCTCTTGGGATCCCCTAACCAGAGCCTTTTTGCCATAGGGCTGCACACTGGTCAAATCAGTACT
GCCCGTCCAGTCCAAGACACAGATTCACCCAGGCAGACTCTCACGGTCTTGATCAAAGACAATGGGGAGC
CTTCGCTCTCCACCACTGCTACCCTCACTGTGTCAGTAACCGAGGACTCTCCTGAAGCCCGAGCCGAGTT
CCCCTCTGGCTCTGCCCCCCGGGAGCAGAAAAAAAATCTCACCTTTTATCTACTTCTTTCTCTAATCCTG
GTTTCTGTGGGGTTTGTGGTCACAGTGTTCGGAGTAATCATATTCAAAGTTTACAAGTGGAAGCAGTCTA
GAGACCTATACCGAGCCCCGGTGAGCTCACTGTACCGAACACCAGGGCCCTCCTTGCACGCGGACGCCGT
GCGGGGAGGCCTGATGTCGCCGCACCTTTACCATCAGGTGTATCTCACCACGGACTCCCGCCGCAGCGAC
CCGCTGCTGAAGAAACCTGGTGCAGCCAGTCCACTGGCCAGCCGCCAGAACACGCTGCGGAGCTGTGATC
CGGTGTTCTATAGGCAGGTGTTGGGTGCAGAGAGCGCCCCTCCCGGACAGCAAGCCCCGCCCAACACGGA
CTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGG
CCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATG
GGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCT
GCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCT
GGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGA
AGTAA

Translation (934 aa):
MVPEAWRSGLVSTGRVVGVLLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVS
GASRRFFEVNRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEM
KLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSL
QLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPNGEII
YSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGAHCKVLVEVVDVNDNAP
EITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETV
PEYNLSITARDAGTPSLSALTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNA
RLSFFLLEQGAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDR
NDNAPQVLYPRPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLHTGQIST
ARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQKKNLTFYLLLSLIL
VSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSD
PLLKKPGAASPLASRQNTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
GKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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