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Report for CCDS42687.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42687.2 Public Homo sapiens 2 FAM161A 24 110 108 CCDS HistoryNCBI Gene:84140Re-query CCDS DB by CCDS ID:42687.2Re-query CCDS DB by GeneID:84140See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 42687.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42687.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405894.3 ENSP00000385893.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405894.3Link to Ensembl Protein Viewer:ENSP00000385893.3Re-query CCDS DB by Nucleotide ID:ENST00000405894Re-query CCDS DB by Protein ID:ENSP00000385893
Original member Current member NCBI NM_032180.3 NP_115556.2 Accepted alive Link to Nucleotide Sequence:NM_032180.3Link to Protein Sequence:NP_115556.2Re-query CCDS DB by Nucleotide ID:NM_032180Re-query CCDS DB by Protein ID:NP_115556Link to BLAST:NP_115556.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115556.2 660 Q3B820-1 660 100% 0 0

Chromosomal Locations for CCDS 42687.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61826455 61826599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61827104 61827258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61836010 61836109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61839421 61840581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61842122 61842360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61853859 61854041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGCCACCTCCCACCGAGTGGCGAAGCTGGTGGCCTCCAGTCTCCAGACCCCGGTAAATCCCATCACTG
GAGCGCGGGTCGCCCAGTACGAACGCGAAGACCCCTTAAAGGCCCTGGCGGCAGCGGAGGCGATCTTGGA
GGACGAAGAGGAGGAGAAAGTGGCTCAGCCCGCTGGGGCATCGGCTGATTTGAACACCAGCTTTTCTGGG
GTGGATGAACATGCACCGATAAGCTATGAGGACTTTGTGAACTTTCCTGATATTCACCACTCTAATGAGG
AGTATTTCAAGAAAGTAGAAGAGTTGAAGGCTGCCCACATAGAAACTATGGCAAAATTAGAGAAAATGTA
CCAGGATAAATTACATTTAAAGGAAGTTCAGCCAGTGGTCATCAGAGAAGACTCTCTTAGTGACTCTTCC
AGATCTGTATCAGAAAAGAACTCCTATCACCCTGTCTCATTAATGACATCATTTTCAGAGCCTGATTTAG
GCCAGTCTTCCTCCTTGTATGTGTCCTCCTCTGAAGAGGAGTTACCCAACCTAGAAAAAGAGTATCCTAG
GAAAAACAGAATGATGACCTATGCTAAGGAGCTCATCAACAATATGTGGACAGACTTTTGTGTTGAGGAT
TATATTCGCTGTAAAGATACTGGCTTCCATGCAGCTGAAAAAAGAAGGAAGAAACGAAAAGAATGGGTGC
CCACAATTACAGTACCGGAGCCTTTTCAAATGATGATAAGAGAACAGAAGAAAAAAGAAGAGTCCATGAA
ATCTAAATCAGATATCGAAATGGTACATAAAGCGCTCAAAAAACAAGAAGAGGATCCAGAGTATAAGAAG
AAATTCCGAGCCAATCCAGTTCCTGCATCTGTCTTTCTCCCCCTTTACCATGATTTAGTCAAGCAAAAAG
AAGAACGGAGAAGGTCTCTGAAGGAGAAAAGCAAAGAAGCTCTTTTGGCCTCACAAAAGCCATTTAAATT
TATAGCAAGGGAGGAACAGAAGCGAGCAGCCCGGGAAAAGCAGCTGAGAGACTTTCTTAAGTATAAAAAG
AAAACAAATCGATTTAAAGCCAGACCCATTCCTCGATCTACTTATGGTTCAACTACCAATGACAAGTTAA
AAGAAGAAGAGCTCTATCGAAACCTTAGGACACAGCTGAGAGCCCAGGAGCATTTACAGAACTCATCTCC
TCTGCCTTGTAGGTCAGCTTGTGGATGCAGGAACCCCAGGTGTCCTGAACAGGCTGTAAAGTTGAAGTGT
AAACACAAGGTTAGGTGCCCAACTCCTGATTTTGAGGACCTTCCTGAGAGATACCAGAAACACCTCTCAG
AACACAAGTCTCCAAAACTCTTAACAGTGTGTAAACCATTTGATCTTCATGCATCTCCACATGCATCTAT
TAAAAGAGAAAAAATTTTGGCAGACATCGAAGCAGATGAAGAAAATTTAAAAGAAACACGTTGGCCTTAT
TTGTCTCCAAGGCGTAAGTCACCAGTAAGATGTGCAGGTGTAAACCCTGTGCCTTGTAACTGCAACCCTC
CCGTGCCCACGGTATCTTCCAGAGGACGAGAACAAGCCGTAAGAAAGAGCGAAAAGGAAAGGATGAGAGA
ATACCAACGAGAACTAGAAGAAAGAGAAGAAAAATTAAAAAAGAGGCCACTGCTATTTGAAAGAGTTGCT
CAGAAAAATGCAAGAATGGCAGCAGAAAAGCATTATTCTAATACCCTAAAAGCACTAGGAATATCTGATG
AGTTTGTTTCAAAGAAAGGCCAAAGTGGAAAAGTACTTGAGTACTTCAACAATCAAGAGACGAAAAGTGT
CACTGAAGACAAAGAAAGCTTTAATGAAGAAGAAAAAATAGAAGAAAGAGAGAATGGGGAAGAAAATTAT
TTTATTGATACCAACAGCCAGGATTCTTACAAGGAAAAAGATGAAGCCAATGAGGAAAGTGAAGAAGAGA
AATCTGTTGAAGAATCACACTGA

Translation (660 aa):
MATSHRVAKLVASSLQTPVNPITGARVAQYEREDPLKALAAAEAILEDEEEEKVAQPAGASADLNTSFSG
VDEHAPISYEDFVNFPDIHHSNEEYFKKVEELKAAHIETMAKLEKMYQDKLHLKEVQPVVIREDSLSDSS
RSVSEKNSYHPVSLMTSFSEPDLGQSSSLYVSSSEEELPNLEKEYPRKNRMMTYAKELINNMWTDFCVED
YIRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQMMIREQKKKEESMKSKSDIEMVHKALKKQEEDPEYKK
KFRANPVPASVFLPLYHDLVKQKEERRRSLKEKSKEALLASQKPFKFIAREEQKRAAREKQLRDFLKYKK
KTNRFKARPIPRSTYGSTTNDKLKEEELYRNLRTQLRAQEHLQNSSPLPCRSACGCRNPRCPEQAVKLKC
KHKVRCPTPDFEDLPERYQKHLSEHKSPKLLTVCKPFDLHASPHASIKREKILADIEADEENLKETRWPY
LSPRRKSPVRCAGVNPVPCNCNPPVPTVSSRGREQAVRKSEKERMREYQRELEEREEKLKKRPLLFERVA
QKNARMAAEKHYSNTLKALGISDEFVSKKGQSGKVLEYFNNQETKSVTEDKESFNEEEKIEERENGEENY
FIDTNSQDSYKEKDEANEESEEEKSVEESH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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