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Report for CCDS42865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42865.1 Public Homo sapiens 20 BPIFA3 24 110 108 CCDS HistoryNCBI Gene:128861Re-query CCDS DB by CCDS ID:42865.1Re-query CCDS DB by GeneID:128861See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375452.3 ENSP00000364601.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375452.3Link to Ensembl Protein Viewer:ENSP00000364601.3Re-query CCDS DB by Nucleotide ID:ENST00000375452Re-query CCDS DB by Protein ID:ENSP00000364601
Original member Current member NCBI NM_001042439.2 NP_001035904.1 Accepted alive Link to Nucleotide Sequence:NM_001042439.2Link to Protein Sequence:NP_001035904.1Re-query CCDS DB by Nucleotide ID:NM_001042439Re-query CCDS DB by Protein ID:NP_001035904Link to BLAST:NP_001035904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035904.1 218 Q9BQP9-2 218 100% 0 0

Chromosomal Locations for CCDS 42865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33217537 33217663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33223811 33223961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33225098 33225247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33226406 33226490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33226930 33226993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33227538 33227617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGATGTGTCCACTCTGGAGGCTCCTCATCTTCCTCGGGTTGCTGGCCTTGCCCTTGGCACCACACAAGC
AGCCTTGGCCTGGCCTGGCCCAAGCCCACAGAGACAACAAATCCACCCTGGCAAGAATTATTGCTCAGGG
CCTCATAAAGCACAACGCAGAAAGCCGAATTCAGAACATCCACTTTGGGGACAGACTGAATGCCTCAGCA
CAAGTGGCCCCAGGGCTGGTGGGCTGGCTAATCAGCGGCAGGAAACACCAGCAGCAGCAAGAGAGCAGGT
CCTTCGATAACAACATCGTAAAGATGTGTGCACATATGAGCATCGTTGTGGAGTTCTGGCTGGAGAAAGA
CGAGTTTGGCCGGAGGGATCTGGTGATAGGCAAATGCGATGCAGAGCCCAGCAGTGTCCATGTGGCCATC
CTCACTGAGGCTATCCCACCAAAGATGAATCAGTTTCTCTACAACCTCAAAGAGAATCTGCAAAAAGTTC
TCCCACACATGGTAGAAAGTCAGGTATGTCCTCTGATCGGTGAAATCCTCGGGCAGCTGGATGTGAAACT
GTTGAAAAGCCTCATAGAACAGGAGGCTGCTCATGAACCAACCCACCATGAAACCAGCCAACCCTCTGCA
TGCCAGGCTGGAGAGTCCCCCAGCTGA

Translation (218 aa):
MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNIHFGDRLNASA
QVAPGLVGWLISGRKHQQQQESRSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAI
LTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIEQEAAHEPTHHETSQPSA
CQAGESPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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